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BaseInfo

ncRNA ID	osa-miR167h-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:25480618-25480737 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	92 - AGGUCAUGCUGUAGUUUCAUC - 112
Stem-loop(if miRNA)	C  A   U           C             GA    GA      -ACCUCUC   UCUG  AC AGU GGUGAAGCUGC AGCAUGAUCUGAU  UGAU  UGAUCC        UCA    U  || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||  UG UCG CUACUUUGAUG UCGUACUGGACUA  GCUA  ACUAGG        AGU    G U  G   U           -             --    --      CAUUAAUU   UCUU
Stem-loop sequence	CACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015765373.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *=||||=|||||||||||=|| targets:2189   UGUGAAGCUACAGCAUGAUCU   2209 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107279840), mRNA	wall-associated receptor kinase 3-like(LOC107279840)	coding protein	psRNATarget
XM_015760255.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *=||||=|||||||||||=|| targets:2189   UGUGAAGCUACAGCAUGAUCU   2209 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107276842), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107276842)	coding protein	psRNATarget
XM_015760254.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *=||||=|||||||||||=|| targets:2243   UGUGAAGCUACAGCAUGAUCU   2263 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107276842), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107276842)	coding protein	psRNATarget
AK064374.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *|*|||||||||||||||||| targets:611   CAAGAAACUACAGCAUGACCU   631 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-108-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015793480.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *|*|||||||||||||||||| targets:1143   CAAGAAACUACAGCAUGACCU   1163 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266030 (LOC9266030), transcript variant X2, mRNA	uncharacterized LOC9266030(LOC9266030)	coding protein	psRNATarget
XM_015793498.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *|*|||||||||||||||||| targets:1730   CAAGAAACUACAGCAUGACCU   1750 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266030 (LOC9266030), transcript variant X5, mRNA	uncharacterized LOC9266030(LOC9266030)	coding protein	psRNATarget
XM_015793487.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *|*|||||||||||||||||| targets:1731   CAAGAAACUACAGCAUGACCU   1751 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266030 (LOC9266030), transcript variant X3, mRNA	uncharacterized LOC9266030(LOC9266030)	coding protein	psRNATarget
XM_015793472.1	ncRNA:21   CUACUUUGAUGUCGUACUGGA   1   *|*|||||||||||||||||| targets:1728   CAAGAAACUACAGCAUGACCU   1748 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266030 (LOC9266030), transcript variant X1, mRNA	uncharacterized LOC9266030(LOC9266030)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).