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BaseInfo

ncRNA ID osa-miR167h-5p
Species Oryza sativa
Class miRNA
Genome position Chr12:25480618-25480737 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Stem-loop(if miRNA) C  A   U           C             GA    GA      -ACCUCUC   UCUG
 AC AGU GGUGAAGCUGC AGCAUGAUCUGAU  UGAU  UGAUCC        UCA    U
 || ||| ||||||||||| |||||||||||||  ||||  ||||||        |||
 UG UCG CUACUUUGAUG UCGUACUGGACUA  GCUA  ACUAGG        AGU    G
U  G   U           -             --    --      CAUUAAUU   UCUU
Stem-loop sequence CACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).