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BaseInfo

ncRNA ID	osa-miR167a-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:25476808-25476948 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	110 - AUCAUGCAUGACAGCCUCAUUU - 131
Stem-loop(if miRNA)	U      A    C  -            UC     A  CG    --UG      UAC    G UAGUGUGAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUU AU  GCAC    UUGGCG   AGUC A ||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   |||| GUCACACUU UUUACU CGAC GU CGUACUAGAUUG  ACUAA UG  UGUG    GACUGC   UCAG U          C      C    A  A            UC     A  UG    UCUA      UAA    U
Stem-loop sequence	UAGUGUGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUAAUCGGCACUGUUGGCGUACAGUCGAUUGACUAAUCGUCAGAUCUGUGUGUGUAAAUCACUGUUAGAUCAUGCAUGACAGCCUCAUUUCUUCACACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073440.1	ncRNA:22   UUUACUCCGACAGUACGUACUA   1   =|||||||||||||||||||=* targets:627   GAAUGAGGCUGUCAUGCAUGGC   648 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033046F03, full insert sequence	NA	coding protein	psRNATarget
XM_015772729.1	ncRNA:22   UUUACUCCGACAGUACGUACUA   1   =|||||||||||||||||||=* targets:663   GAAUGAGGCUGUCAUGCAUGGC   684 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tryptophan synthase alpha chain (LOC4334425), transcript variant X1, mRNA	tryptophan synthase alpha chain(LOC4334425)	coding protein	psRNATarget
XM_015772730.1	ncRNA:22   UUUACUCCGACAGUACGUACUA   1   =|||||||||||||||||||=* targets:663   GAAUGAGGCUGUCAUGCAUGGC   684 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tryptophan synthase alpha chain (LOC4334425), transcript variant X2, mRNA	tryptophan synthase alpha chain(LOC4334425)	coding protein	psRNATarget
XM_015758011.1	ncRNA:22   UUUACUCCGACAGUACGUACUA   1   ==*||||||||*|||||||||* targets:2098   GGCUGAGGCUGACAUGCAUGAG   2119 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348002 (LOC4348002), mRNA	uncharacterized LOC4348002(Os10g0121534)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008).