ncRNA ID | osa-miR167a-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:25476808-25476948 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 14 - UGAAGCUGCCAGCAUGAUCUA - 34 |
Stem-loop(if miRNA) |
         U      A    C  -            UC     A  CG    --UG      UAC    G UAGUGUGAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUU AU  GCAC    UUGGCG   AGUC A ||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   |||| GUCACACUU UUUACU CGAC GU CGUACUAGAUUG  ACUAA UG  UGUG    GACUGC   UCAG U          C      C    A  A            UC     A  UG    UCUA      UAA    U |
Stem-loop sequence | UAGUGUGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUAAUCGGCACUGUUGGCGUACAGUCGAUUGACUAAUCGUCAGAUCUGUGUGUGUAAAUCACUGUUAGAUCAUGCAUGACAGCCUCAUUUCUUCACACUG |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |