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BaseInfo

ncRNA ID osa-miR167a-5p
Species Oryza sativa
Class miRNA
Genome position Chr12:25476808-25476948 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 14 - UGAAGCUGCCAGCAUGAUCUA - 34
Stem-loop(if miRNA)          U      A    C  -            UC     A  CG    --UG      UAC    G
UAGUGUGAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUU AU  GCAC    UUGGCG   AGUC A
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||
GUCACACUU UUUACU CGAC GU CGUACUAGAUUG  ACUAA UG  UGUG    GACUGC   UCAG U
         C      C    A  A            UC     A  UG    UCUA      UAA    U
Stem-loop sequence UAGUGUGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUAAUCGGCACUGUUGGCGUACAGUCGAUUGACUAAUCGUCAGAUCUGUGUGUGUAAAUCACUGUUAGAUCAUGCAUGACAGCCUCAUUUCUUCACACUG

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).