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BaseInfo

ncRNA ID	osa-miR5821
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:24605427-24605673 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	8 - UGGACGGAGCGAUGGUGGGCG - 28
Stem-loop(if miRNA)	A U   C  A C A      -   -  UG -       CAGC      A  C     U A CA   -   GG   -AAA     C ACA C  G       CAGAGCGACA      -      -C      CUGGC G GGA GG G G UGGUGG GCG GC  G CGGUGGG    GGGAGG AG GGAGC G G  GCG GCG  GCG    UGGAG G   G GG CGGUGGG          AGGGCG AAGAGG  CGGUGA ||||| | ||| || | | |||||| ||| ||  | |||||||    |||||| || ||||| | |  ||| |||  |||    ||||| |   | || |||||||          |||||| ||||||  |||||G GGCCG C CCU UC C C ACCGCC CGU UG  C GCUACCC    CCCUCC UC CCUCG C C  CGC CGC  CGC    ACCUC C   C CC GCUACCC          UUCCGC UUCUCC  GCCACC      - -   U  - - A      A   G  GU A       ---A      C  U     - - AC   G   AA   GGCC     U --C A  G       ----------      C      UC
Stem-loop sequence	CUGGCAGUGGACGGAGCGAUGGUGGGCGGCUGGCGGUGGGCAGCGGGAGGAAGCGGAGCUGAGCAGCGGCGGGGCGAAAUGGAGCGACAGCGGGCGGUGGGCAGAGCGACAAGGGCGAAGAGGCCGGUGAGCCACCGCUCCUCUUCCGCCUUCCCAUCGGCCACCCUCUCCACCGGCGCAACGCGCGCCACCGCUCCUCUCCCUCCCACCCAUCGACUGGUGUGCACCGCCAACCCUUUCCCGCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015775231.1	ncRNA:21   GCGGGUGGUAGCGAGGCAGGU   1   |||||=|||||||||||*||| targets:1059   CGCCCGCCAUCGCUCCGCCCA   1079 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X3, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775234.1	ncRNA:21   GCGGGUGGUAGCGAGGCAGGU   1   |||||=|||||||||||*||| targets:1059   CGCCCGCCAUCGCUCCGCCCA   1079 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X6, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775229.1	ncRNA:21   GCGGGUGGUAGCGAGGCAGGU   1   |||||=|||||||||||*||| targets:1049   CGCCCGCCAUCGCUCCGCCCA   1069 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X1, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
AK243575.1	ncRNA:21   GCGGGUGGUAGCGAGGCAGGU   1   |||||=|||||||||||*||| targets:1009   CGCCCGCCAUCGCUCCGCCCA   1029 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100082H15, full insert sequence	NA	coding protein	psRNATarget
XM_015775230.1	ncRNA:21   GCGGGUGGUAGCGAGGCAGGU   1   |||||=|||||||||||*||| targets:884   CGCCCGCCAUCGCUCCGCCCA   904 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X2, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).