ncRNA ID | osa-miR5791 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:24374418-24374566 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 103 - UUGCAGGAGACUAGAGACCAG - 123 |
Stem-loop(if miRNA) |
U      UCAGA       G      ---UAGA      GCA    U     -A   -  A  AG      GG   UU  GCUGGU     UGGAAGA UAAAAU       UCUAGU   UUGC AUGUU  GGC CU GG  GCACCA  AAC  C  ||||||     ||||||| ||||||       ||||||   |||| |||||  ||| || ||  ||||||  |||  CGACUA     ACUUUCU GUUUUA       AGAUCA   GACG UACGA  UCG GG CC  CGUGGU  UUG  C A      -CUAA       G      CGACCAG      GAG    U     AG   A  A  -A      --   UU |
Stem-loop sequence | UGCUGGUUCAGAUGGAAGAGUAAAAUUAGAUCUAGUGCAUUGCUAUGUUAGGCCUAGGAGGCACCAGGAACUUCCUUGUUUGGUGCACCAGGAGCUGAAGCAUUGCAGGAGACUAGAGACCAGCAUUUUGGUCUUUCAAAUCAUCAGCA |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |