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BaseInfo

ncRNA ID osa-miR5791
Species Oryza sativa
Class miRNA
Genome position Chr12:24374418-24374566 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 103 - UUGCAGGAGACUAGAGACCAG - 123
Stem-loop(if miRNA) U      UCAGA       G      ---UAGA      GCA    U     -A   -  A  AG      GG   UU
 GCUGGU     UGGAAGA UAAAAU       UCUAGU   UUGC AUGUU  GGC CU GG  GCACCA  AAC  C
 ||||||     ||||||| ||||||       ||||||   |||| |||||  ||| || ||  ||||||  |||
 CGACUA     ACUUUCU GUUUUA       AGAUCA   GACG UACGA  UCG GG CC  CGUGGU  UUG  C
A      -CUAA       G      CGACCAG      GAG    U     AG   A  A  -A      --   UU
Stem-loop sequence UGCUGGUUCAGAUGGAAGAGUAAAAUUAGAUCUAGUGCAUUGCUAUGUUAGGCCUAGGAGGCACCAGGAACUUCCUUGUUUGGUGCACCAGGAGCUGAAGCAUUGCAGGAGACUAGAGACCAGCAUUUUGGUCUUUCAAAUCAUCAGCA

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).