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BaseInfo

ncRNA ID osa-miR5530
Species Oryza sativa
Class miRNA
Genome position Chr12:21782328-21782445 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AGUGGUGUCGUAUUACCUGCC - 31
Stem-loop(if miRNA) A     G  G  UGGUGUCGUAUUACCUGCCCUUAUAGGACAUGAUGCAUCAUGCAUGC
 CUGUU GC AG                                               A
 ||||| || ||
 GACGA UG AU                                               U
G     -  -  UAAUAAUCAAAUGUAUGAUCUCCAUAGUAUAGUACGAGGGUCGGUAU
Stem-loop sequence ACUGUUGGCGAGUGGUGUCGUAUUACCUGCCCUUAUAGGACAUGAUGCAUCAUGCAUGCAUUAUGGCUGGGAGCAUGAUAUGAUACCUCUAGUAUGUAAACUAAUAAUUAGUAGCAGG

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).