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BaseInfo

ncRNA ID osa-miR1882h
Species Oryza sativa
Class miRNA
Genome position Chr12:21511519-21511711 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 36 - AGAUUGCUUUCAAGGUCAUUUCUU - 59
Stem-loop(if miRNA) CA   -     AA   ---          C   U            U              U           -C   C     A  U     U   A
  UGU CUAGA  UCU   GUUAUCGUUA CAA UUCCUAGAUUGC UUCAAGGUCAUUUC UUCUGAAACCC  GUU CCAUA AU CAGUA CCA A
  ||| |||||  |||   |||||||||| ||| |||||||||||| |||||||||||||| |||||||||||  ||| ||||| || ||||| |||
  ACG GAUCU  GGA   CAAUAGCAGU GUU GAGGAUCUAACG AGGUUCUAGUAAAG AAGACUUUGGG  UAA GGUAU UA GUUGU GGU G
UA   U     GG   UUG          C   U            C              U           AA   A     C  U     U   C
Stem-loop sequence CAUGUCUAGAAAUCUGUUAUCGUUACCAAUUUCCUAGAUUGCUUUCAAGGUCAUUUCUUUCUGAAACCCCGUUCCCAUAAAUUCAGUAUCCAAAGCUGGUUGUUGUAUCUAUGGAAAUAAGGGUUUCAGAAUGAAAUGAUCUUGGACGCAAUCUAGGAGUUUGCUGACGAUAACGUUAGGGGUCUAGUGCAAU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).