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BaseInfo

ncRNA ID	osa-miR5832
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21168996-21169086 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	63 - UUGGCGGAGCGGUUGCUGUCA - 83
Stem-loop(if miRNA)	CA    GA    U  U  C  AUA      ----- U    -  GA   U   UCAG  GUUG CA GC AC   UCCGUC     C CACC CU  CCA U   ||||  |||| || || ||   ||||||     | |||| ||  |||   AGUC  CGAC GU CG UG   AGGCGG     G GUGG GA  GGU A -G    -A    U  -  U  GCG      UUUAC C    A  --   G
Stem-loop sequence	CAUCAGGAGUUGUCAUGCCACAUAUCCGUCCUCACCCUGACCAUUAGUGGAGAGGUGCGCAUUUGGCGGAGCGGUUGCUGUCAGCACUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106252.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||||||=|||||||||||* targets:1046   CCACAGCAGCCGCUCCGCCAC   1066 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-100-E04, full insert sequence	NA	coding protein	psRNATarget
XM_015766177.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||=||=||||||||||||* targets:269   CCACGGCGACCGCUCCGCCAU   289 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable glutathione S-transferase (LOC4325763), mRNA	probable glutathione S-transferase(LOC4325763)	coding protein	psRNATarget
AK121363.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||=||=||||||||||||* targets:234   CCACGGCGACCGCUCCGCCAU   254 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023124N01, full insert sequence	NA	coding protein	psRNATarget
AK069037.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||=||=||||||||||||* targets:232   CCACGGCGACCGCUCCGCCAU   252 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023004F17, full insert sequence	NA	coding protein	psRNATarget
CT833962.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||=||=||||||||||||* targets:224   CCACGGCGACCGCUCCGCCAU   244 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110D05, full insert sequence	NA	coding protein	psRNATarget
CT833961.1	ncRNA:21   ACUGUCGUUGGCGAGGCGGUU   1   **||=||=||||||||||||* targets:197   CCACGGCGACCGCUCCGCCAU   217 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA003N03, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).