ncRNA ID | osa-miR5507 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:21019878-21020122 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - AAUGAGAAUGAUGACCCGGUG - 31 |
Stem-loop(if miRNA) |
AAA -   -A        UG   G       AAAAAAACAGUCU   - C   -    U  A   GGUCUAAUUGCAUGGACUCUCUAUGAGGAAAUACGAUCCUGUGAGGGUGCUGGUUAGCUGCACCA    G CAU  UAUUGGGU  UCG UUUUCAU             GGU U AGC CAGU CU GCA                                                                 A    | |||  ||||||||  ||| |||||||             ||| | ||| |||| || |||                                                                 U    C GUA  GUGGCCCA  AGU AAGAGUA             GGU G CAC ACCU AG ACU                                                                 G CAA A   AA        GU   -       -----------AC   A -   C    U  -   ACAUACCAGGUCUCACGCGAGCGACGACCGCACUCAGCGCGCGAUACGUCGACCCCGGAGGUAGU |
Stem-loop sequence | AAAGCAUAUAUUGGGUUGUCGGUUUUCAUAAAAAAACAGUCUGGUUCAGCCAGUUCUAGCAGGUCUAAUUGCAUGGACUCUCUAUGAGGAAAUACGAUCCUGUGAGGGUGCUGGUUAGCUGCACCAAUGUGAUGGAGGCCCCAGCUGCAUAGCGCGCGACUCACGCCAGCAGCGAGCGCACUCUGGACCAUACAUCAGAUUCCACCACGAUGGCAAUGAGAAUGAUGACCCGGUGAAAUGACAAC |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |