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BaseInfo

ncRNA ID osa-miR5507
Species Oryza sativa
Class miRNA
Genome position Chr12:21019878-21020122 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AAUGAGAAUGAUGACCCGGUG - 31
Stem-loop(if miRNA) AAA -   -A        UG   G       AAAAAAACAGUCU   - C   -    U  A   GGUCUAAUUGCAUGGACUCUCUAUGAGGAAAUACGAUCCUGUGAGGGUGCUGGUUAGCUGCACCA
   G CAU  UAUUGGGU  UCG UUUUCAU             GGU U AGC CAGU CU GCA                                                                 A
   | |||  ||||||||  ||| |||||||             ||| | ||| |||| || |||                                                                 U
   C GUA  GUGGCCCA  AGU AAGAGUA             GGU G CAC ACCU AG ACU                                                                 G
CAA A   AA        GU   -       -----------AC   A -   C    U  -   ACAUACCAGGUCUCACGCGAGCGACGACCGCACUCAGCGCGCGAUACGUCGACCCCGGAGGUAGU
Stem-loop sequence AAAGCAUAUAUUGGGUUGUCGGUUUUCAUAAAAAAACAGUCUGGUUCAGCCAGUUCUAGCAGGUCUAAUUGCAUGGACUCUCUAUGAGGAAAUACGAUCCUGUGAGGGUGCUGGUUAGCUGCACCAAUGUGAUGGAGGCCCCAGCUGCAUAGCGCGCGACUCACGCCAGCAGCGAGCGCACUCUGGACCAUACAUCAGAUUCCACCACGAUGGCAAUGAGAAUGAUGACCCGGUGAAAUGACAAC

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).