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BaseInfo

ncRNA ID	osa-miR5539b
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:20553788-20553863 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	45 - AAGAAAACGGAUGCGCGUGCUA - 66
Stem-loop(if miRNA)	GA   A       AA       - C   UG   A   U   UUC AAGCAAG  AACGGAU G GCG  CUA CGC U   ||| |||||||  ||||||| | |||  ||| |||   AAG UUUGUUC  UUGCCUA C CGC  GAU GCG U AC   G       -G       A U   GU   C   C
Stem-loop sequence	GAUUCAAAGCAAGAAAACGGAUGCGCGUGCUAACGCUUUCGCGCUAGUGCGCUCAAUCCGUUGCUUGUUUGGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
S68845.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   |||||||||||||||||||||| targets:164   UAGCACGCGCAUCCGUUUUCUU   185 Target Full Sequence	0.0	rps3 {PRS, clone 361, intron, palindromic repeated sequence} [Oryza sativa=rice, Nipponbare, mRNA Mitochondrial, 323 nt]	NA	coding protein	psRNATarget
AK288765.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   |||||||||||||||||||||| targets:1710   UAGCACGCGCAUCCGUUUUCUU   1731 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090067G16, full insert sequence	NA	coding protein	psRNATarget
AK288548.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   |||||||||||||||||||||| targets:3480   UAGCACGCGCAUCCGUUUUCUU   3501 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090046J02, full insert sequence	NA	coding protein	psRNATarget
XM_015759269.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||||||||*||||||||||||| targets:2668   UAGCACGCACAUCCGUUUUCUU   2689 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC107279229), transcript variant X1, mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC107279229)	coding protein	psRNATarget
XM_015759279.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||||||||*||||||||||||| targets:4136   UAGCACGCACAUCCGUUUUCUU   4157 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC107279229), transcript variant X2, mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC107279229)	coding protein	psRNATarget
AK105658.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||-|||||||||*||||||||| targets:985   UA-CACGCGCAUACGUUUUCUU   1005 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-200-G09, full insert sequence	NA	coding protein	psRNATarget
AK064285.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||-|||||||||*||||||||| targets:1572   UA-CACGCGCAUACGUUUUCUU   1592 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-105-G10, full insert sequence	NA	coding protein	psRNATarget
AK106482.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||-|||||||||*||||||||| targets:861   UA-CACGCGCAUACGUUUUCUU   881 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-104-F08, full insert sequence	NA	coding protein	psRNATarget
AK288589.1	ncRNA:22   AUCGUGCGCGUAGGCAAAAGAA   1   ||-|||||||||*||||||||| targets:1200   UA-CACGCGCAUACGUUUUCUU   1220 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090050F01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).