Search result

BaseInfo

ncRNA ID	osa-miR5801
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:19318211-19318289 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	49 - ACCAAAUCGUUUUCGAUCGUUGGA - 72
Stem-loop(if miRNA)	A       U               GAUU   CU   UCACG UACCAAA CGUUUUCGAUCGUUG    AUC  GCC ||||| ||||||| |||||||||||||||    |||  ||G AGUGU AUGGUUU GCAAAAGCUAGCAAC    UAG  CGA      C       U               ----   AU
Stem-loop sequence	UCACGAUACCAAAUCGUUUUCGAUCGUUGGAUUAUCCUGCCGAGCUAGAUCAACGAUCGAAAACGUUUUGGUACUGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778221.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||||=|||||||||||| targets:3062   UCCAACGAUCGGAAACGAUUUGGU   3085 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||||=|||||||||||| targets:3113   UCCAACGAUCGGAAACGAUUUGGU   3136 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK288361.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||=|=|||||||||||| targets:2990   UCCAACGAUUGGAAACGAUUUGGU   3013 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence	NA	coding protein	psRNATarget
LQ236069.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||=||||||*||||||| targets:71   UCCAACGAUUGAAAACAAUUUGGU   94 Target Full Sequence	2.5	Sequence 2064 from Patent EP2985353	NA	coding protein	psRNATarget
HI403939.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||=||||||*||||||| targets:71   UCCAACGAUUGAAAACAAUUUGGU   94 Target Full Sequence	2.5	Sequence 2064 from Patent EP2074227	NA	coding protein	psRNATarget
JB164400.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||=||||||*||||||| targets:71   UCCAACGAUUGAAAACAAUUUGGU   94 Target Full Sequence	2.5	Sequence 2064 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015779289.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||||||||||||||*|* targets:1553   UCCAACGAUCGAAAACGAUUUAGC   1576 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779283.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||||||||||||||*|* targets:1744   UCCAACGAUCGAAAACGAUUUAGC   1767 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779276.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |||||||||||||||||||||*|* targets:1751   UCCAACGAUCGAAAACGAUUUAGC   1774 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
HI404005.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |=||-||||||=|||||||||||| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	1.5	Sequence 2130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236135.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |=||-||||||=|||||||||||| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	1.5	Sequence 2130 from Patent EP2985353	NA	coding protein	psRNATarget
JB164466.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   |=||-||||||=|||||||||||| targets:23   UUCA-CGAUCGGAAACGAUUUGGU   45 Target Full Sequence	1.5	Sequence 2130 from Patent EP2559767	NA	coding protein	psRNATarget
CT833476.1	ncRNA:24   AGGUUGCUAGCUUUUGCUAAACCA   1   ||||*||||*|||||||||||*|| targets:1007   UCCAUCGAUGGAAAACGAUUUAGU   1030 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072I05, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).