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BaseInfo

ncRNA ID osa-miR166g-5p
Species Oryza sativa
Class miRNA
Genome position Chr12:18329367-18329511 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 15 - AAUGGAGGCUGAUCCAAGAUC - 35
Stem-loop(if miRNA)           CU         G   A   A     AUU   UGGUGCAAAAUACUAGGGCAUUGUUGUAAGU
AGCAUGGUGU  GGAAUGGAG CUG UCC AGAUC   GCU                               G
||||||||||  ||||||||| ||| ||| |||||   |||                               C
UCGUGCCACA  CCUUACUUC GAC AGG UCUAG   AGC                               C
          CU         G   C   C     --G   UAUUGUUUGAGCCUUUGUUUUUUCUUGAUUA
Stem-loop sequence AGCAUGGUGUCUGGAAUGGAGGCUGAUCCAAGAUCAUUGCUUGGUGCAAAAUACUAGGGCAUUGUUGUAAGUGCCAUUAGUUCUUUUUUGUUUCCGAGUUUGUUAUCGAGGAUCUCGGACCAGGCUUCAUUCCUCACACCGUGCU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).