| ncRNA ID | osa-miR5488 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:18039131-18039343 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UGAAGGCGACUGAUGAUUUCA - 31 |
| Stem-loop(if miRNA) |
AC A A A A -UCAG -GA A C CGCGUGGUGAUUGGAUUUUUACUGUCAUUUUCUCGCAGAAGGCACAGAUUGGAU GC UUUG UGAAGGCG CUGAUG UU GA CACA GAUGA CUUG C || |||| |||||||| |||||| || || |||| ||||| |||| A UG AGAC ACUUUUGU GAUUAC AA CU GUGU CUAUU UUUA U CA A - A C UUAGA AAG - U AACAAAUAAAUUUUCCUAACACAAAGAACGUUCGAACACUACGACAAGUCUCAU |
| Stem-loop sequence | ACGCAUUUGAUGAAGGCGACUGAUGAUUUCAGGAGACACAAGAUGACCUUGCGCGUGGUGAUUGGAUUUUUACUGUCAUUUUCUCGCAGAAGGCACAGAUUGGAUCAUUACUCUGAACAGCAUCACAAGCUUGCAAGAAACACAAUCCUUUUAAAUAAACAAAUUUUUUAUCUGUGGAAUCAGAUUAACCAUUAGAUGUUUUCACAGAAGUAC |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |
| 2 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |