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BaseInfo

ncRNA ID	osa-miR5162
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:16421196-16421377 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	13 - AAAUGACCAAAAUACCCCUAGAAC - 36
Stem-loop(if miRNA)	U  UU      C                   A A       UUU     AUUUGGAUAAAAUUAUCAAAAUAUCAUAUUAUUAACAUAAGC  CA  UUUGUC AAAUGACCAAAAUACCCCU G ACAAAAA   CCGAA                                          U  ||  |||||| ||||||||||||||||||| | |||||||   |||||  GU  AAACAG UUUACUGGUUUUAUGGGGA C UGUUUUU   AGACU                                          U U  UU      U                   C C       --A     UUACAGUCUAAAAUUCAAAAACCGGUUUAAAACCUACGAAUG
Stem-loop sequence	UCAUUUUUGUCCAAAUGACCAAAAUACCCCUAGAACAAAAAUUUCCGAAAUUUGGAUAAAAUUAUCAAAAUAUCAUAUUAUUAACAUAAGCUUGUAAGCAUCCAAAAUUUGGCCAAAAACUUAAAAUCUGACAUUUCAGAAUUUUUGUCCCAGGGGUAUUUUGGUCAUUUUGACAAAUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070748.1	ncRNA:24   CAAGAUCCCCAUAAAACCAGUAAA   1   **|=||||||||||||||||||** targets:1528   ACUUUAGGGGUAUUUUGGUCAUCA   1551 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023068O10, full insert sequence	NA	coding protein	psRNATarget
AK111032.1	ncRNA:24   CAAGAUCCCCAUAAAACCAGUAAA   1   *|*|||*||||||||||||||*|| targets:671   AUACUAAGGGUAUUUUGGUCAGUU   694 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-174-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015766998.1	ncRNA:24   CAAGAUCCCCAUAAAACCAGUAAA   1   ***=*|||||||||||||||||** targets:465   AGAUGAGGGGUAUUUUGGUCAUCA   488 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group monoglyceride lipase (LOC4327343), mRNA	monoglyceride lipase(LOC4327343)	coding protein	psRNATarget
AK068509.1	ncRNA:24   CAAGAUCCCCAUAAAACCAGUAAA   1   ***=*|||||||||||||||||** targets:470   AGAUGAGGGGUAUUUUGGUCAUCA   493 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013154B19, full insert sequence	NA	coding protein	psRNATarget
XM_015770249.1	ncRNA:24   CAAGAUCCCCAUAAAACCAGUAAA   1   ****||*|||||||||||||||*| targets:51   AGGAUAAGGGUAUUUUGGUCAUCU   74 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peroxisomal nicotinamide adenine dinucleotide carrier (LOC4328774), mRNA	peroxisomal nicotinamide adenine dinucleotide carrier(LOC4328774)	coding protein	psRNATarget

Reference

1	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).