ncRNA ID | osa-miR5506 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:15164737-15164847 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 81 - UGGAUCGCUUCGUCUGAUGGU - 101 |
Stem-loop(if miRNA) |
ACCA  UG A  G    - U  GU  -     U ------      UUGAC   A  GG     GU  U UG AUCG C UC  CU GAUGG C      CUCCUA     UCA GU  A     ||  | || |||| | ||  || ||||| |      ||||||     ||| ||  C     CA  A AC UAGC G AG  GA CUACC G      GAGGAU     AGU CA  G GUUA  GU G  G    U C  UG  A     C ACUCGU      -CCCA   -  GU |
Stem-loop sequence | ACCAGUUGUAUGGAUCGCUUCGUCUGAUGGUCCUCCUAUUGACUCAAGUGGACGUGACUGAACCCUAGGAGUGCUCAGCCCAUCAAGGUGACGUCGAUGCAGAUGACAUUG |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |