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BaseInfo

ncRNA ID osa-miR5506
Species Oryza sativa
Class miRNA
Genome position Chr12:15164737-15164847 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 81 - UGGAUCGCUUCGUCUGAUGGU - 101
Stem-loop(if miRNA) ACCA  UG A  G    - U  GU  -     U ------      UUGAC   A  GG
    GU  U UG AUCG C UC  CU GAUGG C      CUCCUA     UCA GU  A
    ||  | || |||| | ||  || ||||| |      ||||||     ||| ||  C
    CA  A AC UAGC G AG  GA CUACC G      GAGGAU     AGU CA  G
GUUA  GU G  G    U C  UG  A     C ACUCGU      -CCCA   -  GU
Stem-loop sequence ACCAGUUGUAUGGAUCGCUUCGUCUGAUGGUCCUCCUAUUGACUCAAGUGGACGUGACUGAACCCUAGGAGUGCUCAGCCCAUCAAGGUGACGUCGAUGCAGAUGACAUUG

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).