| ncRNA ID | osa-miR5505 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:13389006-13389213 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 176 - GAGGAUUCGGUAUUGAUCGCUA - 197 |
| Stem-loop(if miRNA) |
CA G C A C GU UU GAAGCAUUGC AUAUCGAUAUAUAUUUCUUUGCAUGGGACAGUAGCCUUUUCUGCGGCGGAUCGUUUCCUUUU UU GCA U UGGCG AU AUG GAGUUCUU CG C || ||| | ||||| || ||| |||||||| || GA CGU A AUCGC UA UAU CUUAGGAG AG U AA G A A - GU GG ---------U AUACGUUAAGAACAUGAAUAAACUACUUUCUGUUUCUUUCUCUAGUCCAAUAAAUACUAACC |
| Stem-loop sequence | CAUUGGCACUAUGGCGCAUGUAUGUUGAGUUCUUGAAGCAUUGCCGAUAUCGAUAUAUAUUUCUUUGCAUGGGACAGUAGCCUUUUCUGCGGCGGAUCGUUUCCUUUUCUCCAAUCAUAAAUAACCUGAUCUCUUUCUUUGUCUUUCAUCAAAUAAGUACAAGAAUUGCAUAGAUGAGGAUUCGGUAUUGAUCGCUAAAAUGCGAGAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK106577.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:002-111-C06, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |