Search result

BaseInfo

ncRNA ID	osa-miR5074
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:12674516-12674651 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - GAAGGCCACCGUCGGGAUCGC - 31
Stem-loop(if miRNA)	CGUCAUU  -     --  CAC  U   -     CCAA    U  C  UCCC  UC  CC      C  -  GC        CG GGAAG  GC   CG CGG GAUCG    GUCG CG CG    CG  CG  GCUUCG CG UC  C        || |||||  ||   || ||| |||||    |||| || ||    ||  ||  |||||| || ||        GC CCUUC  CG   GC GCC CUAGC    CAGC GC GC    GC  GC  CGAGGC GC AG  G -GCCGCU  U     UU  -CC  C   U     ---C    U  C  ---C  -U  CA      C  U  AA
Stem-loop sequence	CGUCAUUCGGGAAGGCCACCGUCGGGAUCGCCAAGUCGUCGCCGUCCCCGUCCGCCGCUUCGCCGUCGCCGAAGAUCGCCGGAGCACCGUCGCCGCCGUCGACCCGAUCUCCGCCGCCGCUUCUUCCUCGUCGCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288535.1	ncRNA:21   CGCUAGGGCUGCCACCGGAAG   1   ||||*|||||||||||||||| targets:1748   GCGAACCCGACGGUGGCCUUC   1768 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090045H15, full insert sequence	NA	coding protein	psRNATarget
XM_015787149.1	ncRNA:21   CGCUAGGGCUGCCACCGGAAG   1   |=||*||=||||||||||||| targets:506   GUGACCCUGACGGUGGCCUUC   526 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340415 (LOC4340415), mRNA	uncharacterized LOC4340415(LOC4340415)	coding protein	psRNATarget
AK109163.1	ncRNA:21   CGCUAGGGCUGCCACCGGAAG   1   |=||*||=||||||||||||| targets:357   GUGACCCUGACGGUGGCCUUC   377 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-155-G10, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011).