| ncRNA ID | osa-miR5535 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:12445975-12446302 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 297 - UCUGCGUGAUUGAAGUCUGCAU - 318 |
| Stem-loop(if miRNA) |
CCCGAA GAU A U CCCAU ---- ----------------U U -- GCUGCCAUGCCAAUCCGAUCUAUUCCCUUUCUUUUUUUUUGUUUUUGUUUUUUCAUGUUUGCAUGAUCGGUGAUCAGGCCUUUUUUCCCCACGCU CUCGUCUGCGU UGA G CUGCAUCC GAGAGGA AUAG GUC UUGG U G ||||||||||| ||| | |||||||| ||||||| |||| ||| |||| | U GAGUAGACGUA ACU C GACGUAGG AAGAGUG GGGG AGA ACAG A U UAUUAG --- A - --CCU AGAU ACGCUUUUUUUAUGUAU - AA AGUACAGAUCAAUAUUUGUGAUUUGAUUUUGGACCCUUUUAACGUUGGUAUUUCGUAUCUUCUAACUUAGCUGUUCUUUUUGGUGGUACUUAGAC |
| Stem-loop sequence | CCCGAACUCGUCUGCGUGAUUGAAGUCUGCAUCCCCCAUGAGAGGAAUAGUGUCUUUGGUGCUGCCAUGCCAAUCCGAUCUAUUCCCUUUCUUUUUUUUUGUUUUUGUUUUUUCAUGUUUGCAUGAUCGGUGAUCAGGCCUUUUUUCCCCACGCUGUUCAGAUUCAUGGUGGUUUUUCUUGUCGAUUCAAUCUUCUAUGCUUUAUGGUUGCAAUUUUCCCAGGUUUUAGUUUAGUGUUUAUAACUAGACAUGAAAAGACAAGAUAUGUAUUUUUUUCGCAGGGGUAGAGUGAGAAUCCGGAUGCAGCAUCAAUGCAGAUGAGGAUUAU |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |