| ncRNA ID | osa-miR5161 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:12083553-12083828 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 245 - UCUGGAUCAGAGGGAGUAUA - 264 |
| Stem-loop(if miRNA) |
----UU GA A U A C AUUCAAAUC UUCCACAAUAUAAGCAUUUCUACCACUAUUUACACCACUACUUGUCCCAUCAAUCACUUUCCAUCCAAUUUUUUCCCCA CUA AUAUACU CCUCUG UCCA AAUAUAAGCAUUUC AGG UUG U ||| ||||||| |||||| |||| |||||||||||||| ||| ||| C GAU UAUAUGA GGAGAC AGGU UUAUAUUCGUAAAG UCC UCG C UCACUU AG G U C A ---AACAAA UUUCUAAUUCCAACUCCUUUUUUCUGAACCACGGGGAGUUAUUUACUCCCUCUCAAUCCCCCCAACCCCCAACCCCCAA |
| Stem-loop sequence | UUCUAGAAUAUACUACCUCUGUUCCAAAAUAUAAGCAUUUCCAGGAUUCAAAUCUUGUUCCACAAUAUAAGCAUUUCUACCACUAUUUACACCACUACUUGUCCCAUCAAUCACUUUCCAUCCAAUUUUUUCCCCAUCCAACCCCCAACCCCCAACCCCCCUAACUCUCCCUCAUUUAUUGAGGGGCACCAAGUCUUUUUUCCUCAACCUUAAUCUUUGCUAAACAACCUAGAAAUGCUUAUAUUCUGGAUCAGAGGGAGUAUAUGAUAGUUCACU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK243268.1 |
|
3.0 | Oryza sativa Japonica Group cDNA, clone: J100049F13, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |