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BaseInfo

ncRNA ID osa-miR5810
Species Oryza sativa
Class miRNA
Genome position Chr12:7333292-7333419 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - ACGGAACCCUAAUGGCGAUGGCAU - 34
Stem-loop(if miRNA) G  CU           UU  U   C             AG  A   --U  AU   --     AUAG
 UG  UCAUAAAUGCU  UC CCA UUAGGGUUCCGUU  CA CCC   CC  UAA  GUACU    G
 ||  |||||||||||  || ||| |||||||||||||  || |||   ||  |||  |||||    A
 AC  GGUAUUUACGG  AG GGU AAUCCCAAGGCAG  GU GGG   GG  AUU  CGUGA    U
-  AG           -U  C   -             --  A   UGU  CU   UA     CAAG
Stem-loop sequence GUGCUUCAUAAAUGCUUUUCUCCACUUAGGGUUCCGUUAGCAACCCUCCAUUAAGUACUAUAGGAUGAACAGUGCAUUUAUCGGUGUGGGAUGGACGGAACCCUAAUGGCGAUGGCAUUUAUGGGACA

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).