ncRNA ID | osa-miR1430 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:6825011-6825152 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 15 - UGGUGAGCCUUCCUGGCUAAG - 35 |
Stem-loop(if miRNA) |
       GAUUG -    G       A   U    UG  U    -   C     G        -   -    -A A AUGAGGA     C CUCU UUAGCCA GAA GGCU  CC AUCU CCA UAUUU GUUCAUCA CUG GAAC  C C |||||||     | |||| ||||||| ||| ||||  || |||| ||| ||||| |||||||| ||| ||||  | UACUCUU     G GAGA AAUCGGU CUU CCGA  GG UAGA GGU AUAAA UAGGUGGU GAC CUUG  G U        ----A U    G       C   -    GU  -    A   -     G        A   U    GG U |
Stem-loop sequence | AUGAGGAGAUUGCCUCUGUUAGCCAAGAAUGGCUUGCCUAUCUCCACUAUUUGGUUCAUCACUGGAACACACUUGGGGUUCUCAGAUGGUGGAUGAAAUAUGGAAGAUGGUGAGCCUUCCUGGCUAAGAGAGUGAUUCUCAU |
1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |