Search result

BaseInfo

ncRNA ID osa-miR1430
Species Oryza sativa
Class miRNA
Genome position Chr12:6825011-6825152 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 15 - UGGUGAGCCUUCCUGGCUAAG - 35
Stem-loop(if miRNA)        GAUUG -    G       A   U    UG  U    -   C     G        -   -    -A A
AUGAGGA     C CUCU UUAGCCA GAA GGCU  CC AUCU CCA UAUUU GUUCAUCA CUG GAAC  C C
|||||||     | |||| ||||||| ||| ||||  || |||| ||| ||||| |||||||| ||| ||||  |
UACUCUU     G GAGA AAUCGGU CUU CCGA  GG UAGA GGU AUAAA UAGGUGGU GAC CUUG  G U
       ----A U    G       C   -    GU  -    A   -     G        A   U    GG U
Stem-loop sequence AUGAGGAGAUUGCCUCUGUUAGCCAAGAAUGGCUUGCCUAUCUCCACUAUUUGGUUCAUCACUGGAACACACUUGGGGUUCUCAGAUGGUGGAUGAAAUAUGGAAGAUGGUGAGCCUUCCUGGCUAAGAGAGUGAUUCUCAU

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).