ncRNA ID | osa-miR1881 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:5725922-5726259 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 38 - AAUGUUAUUGUAGCGUGGUGGUGU - 61 |
Stem-loop(if miRNA) |
                        A                                         C                   C                    AA  ------------------AAGA    UACCGCUGGGGAAGUGCCAGAAGAAAAGAACAAGGAAGAC AACCAAGUUAAAAUGCUCAUAGGU UGAACAAGCAUCAAUGUUAUUGUAGCGUGGUGGUGUGACCU UGUGCACGUAAGCUUGAGG AGCAAGUUCGACUCCUUCAA  GG                      UUUG                                        U |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||                      |||| UUGGUUCAAUUUUACGAGUGUCCA ACUUGUUCGUAGUUGCAAUAACAUCGCAUCACCACACUGGA ACACGUGCGUUCGAACUCC UCGUUCAAGCUGAGGAAGUU  UC                      CCUG                                        U                         G                                         U                   A                    CG  AAGAAGAAACAAGAAAAGAAGA    GAAAAAAAAAGGUUCAAAUGGCAGGAAAACAGGACGAUCG |
Stem-loop sequence | AACCAAGUUAAAAUGCUCAUAGGUAUGAACAAGCAUCAAUGUUAUUGUAGCGUGGUGGUGUGACCUCUGUGCACGUAAGCUUGAGGCAGCAAGUUCGACUCCUUCAAAAGGAAGAUUUGUACCGCUGGGGAAGUGCCAGAAGAAAAGAACAAGGAAGACUUGCUAGCAGGACAAAAGGACGGUAAACUUGGAAAAAAAAAGGUCCAGAAGAAAAGAACAAAGAAGAACUGCUUGAAGGAGUCGAACUUGCUACCUCAAGCUUGCGUGCACAUAGGUCACACCACUACGCUACAAUAACGUUGAUGCUUGUUCAGACCUGUGAGCAUUUUAACUUGGUU |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |