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BaseInfo

ncRNA ID osa-miR1881
Species Oryza sativa
Class miRNA
Genome position Chr12:5725922-5726259 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 38 - AAUGUUAUUGUAGCGUGGUGGUGU - 61
Stem-loop(if miRNA)                         A                                         C                   C                    AA  ------------------AAGA    UACCGCUGGGGAAGUGCCAGAAGAAAAGAACAAGGAAGAC
AACCAAGUUAAAAUGCUCAUAGGU UGAACAAGCAUCAAUGUUAUUGUAGCGUGGUGGUGUGACCU UGUGCACGUAAGCUUGAGG AGCAAGUUCGACUCCUUCAA  GG                      UUUG                                        U
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UUGGUUCAAUUUUACGAGUGUCCA ACUUGUUCGUAGUUGCAAUAACAUCGCAUCACCACACUGGA ACACGUGCGUUCGAACUCC UCGUUCAAGCUGAGGAAGUU  UC                      CCUG                                        U
                        G                                         U                   A                    CG  AAGAAGAAACAAGAAAAGAAGA    GAAAAAAAAAGGUUCAAAUGGCAGGAAAACAGGACGAUCG
Stem-loop sequence AACCAAGUUAAAAUGCUCAUAGGUAUGAACAAGCAUCAAUGUUAUUGUAGCGUGGUGGUGUGACCUCUGUGCACGUAAGCUUGAGGCAGCAAGUUCGACUCCUUCAAAAGGAAGAUUUGUACCGCUGGGGAAGUGCCAGAAGAAAAGAACAAGGAAGACUUGCUAGCAGGACAAAAGGACGGUAAACUUGGAAAAAAAAAGGUCCAGAAGAAAAGAACAAAGAAGAACUGCUUGAAGGAGUCGAACUUGCUACCUCAAGCUUGCGUGCACAUAGGUCACACCACUACGCUACAAUAACGUUGAUGCUUGUUCAGACCUGUGAGCAUUUUAACUUGGUU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).