ncRNA ID | osa-miR1863c |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:4869207-4869497 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 259 - UAGAAACUUGGCUGAUGCAUUACU - 282 |
Stem-loop(if miRNA) |
---------  C             U     C       U   AUCA  -   U - UUAU  AGCACCAAUCUGCUGCUGAUCUGUUUGUAGUCAUGAAAAGCACUUUAUGAUCUGAAAGUGCUGGCUGUAUGCCAUGGUUUUCCCCAUUCU          AG AAUGCAUCAGUUA GUUUC UGGAUCA UAA    UU GAA G U    CU                                                                                          A          || ||||||||||||| ||||| ||||||| |||    || ||| | |    ||                                                                                          U          UC UUACGUAGUCGGU CAAAG AUUUAGU AUU    CC UAG U U    CG                                                                                          G CAGAGGUUU  A             U     -       U   -GUA  A   - C ----  AUUAUUGAUACUAGGAUUUGGGCUUCAUCUCGGUUGUGCUUAGGUGAUGACUAAUAACGUAGUGAUAAUUCAGUGCUAACGUUAUUAUUG |
Stem-loop sequence | AGCAAUGCAUCAGUUAUGUUUCCUGGAUCAUUAAAUCAUUGAAUGUUUAUCUAGCACCAAUCUGCUGCUGAUCUGUUUGUAGUCAUGAAAAGCACUUUAUGAUCUGAAAGUGCUGGCUGUAUGCCAUGGUUUUCCCCAUUCUAUGGUUAUUAUUGCAAUCGUGACUUAAUAGUGAUGCAAUAAUCAGUAGUGGAUUCGUGUUGGCUCUACUUCGGGUUUAGGAUCAUAGUUAUUAGCUCUGAUACCAUGUUAUUGAUUUAGAAACUUGGCUGAUGCAUUACUUUUGGAGAC |
1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |
2 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |