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BaseInfo

ncRNA ID osa-miR1863c
Species Oryza sativa
Class miRNA
Genome position Chr12:4869207-4869497 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 259 - UAGAAACUUGGCUGAUGCAUUACU - 282
Stem-loop(if miRNA) ---------  C             U     C       U   AUCA  -   U - UUAU  AGCACCAAUCUGCUGCUGAUCUGUUUGUAGUCAUGAAAAGCACUUUAUGAUCUGAAAGUGCUGGCUGUAUGCCAUGGUUUUCCCCAUUCU
         AG AAUGCAUCAGUUA GUUUC UGGAUCA UAA    UU GAA G U    CU                                                                                          A
         || ||||||||||||| ||||| ||||||| |||    || ||| | |    ||                                                                                          U
         UC UUACGUAGUCGGU CAAAG AUUUAGU AUU    CC UAG U U    CG                                                                                          G
CAGAGGUUU  A             U     -       U   -GUA  A   - C ----  AUUAUUGAUACUAGGAUUUGGGCUUCAUCUCGGUUGUGCUUAGGUGAUGACUAAUAACGUAGUGAUAAUUCAGUGCUAACGUUAUUAUUG
Stem-loop sequence AGCAAUGCAUCAGUUAUGUUUCCUGGAUCAUUAAAUCAUUGAAUGUUUAUCUAGCACCAAUCUGCUGCUGAUCUGUUUGUAGUCAUGAAAAGCACUUUAUGAUCUGAAAGUGCUGGCUGUAUGCCAUGGUUUUCCCCAUUCUAUGGUUAUUAUUGCAAUCGUGACUUAAUAGUGAUGCAAUAAUCAGUAGUGGAUUCGUGUUGGCUCUACUUCGGGUUUAGGAUCAUAGUUAUUAGCUCUGAUACCAUGUUAUUGAUUUAGAAACUUGGCUGAUGCAUUACUUUUGGAGAC

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
2 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).