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BaseInfo

ncRNA ID	osa-miR1863b
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:4867257-4867616 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	304 - AGCUCUGAUACCAUGUUAACUGUU - 327
Stem-loop(if miRNA)	-----   U  C             C     C  C       -                 -------A     A    AAUGAAU  UUAU       CAAUCCCC      -- A     UGUAGCUCUCGGGGCAGUACCUAAUCCGCUGCUGAUCUGUUUCUAGUCAUGAAAAGCACUGUGAUCUGUAA      CAA AG AAUGCAUCAGUUA GUUUC UA AUAGUUA CAUGGUAUCAGAGCUGA        AUCCU AACC       GU    CCAGCAC        UGCUGC  U GGAGC                                                                       G      ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||       ||    |||||||        ||||||  | |||||                                                                       U      GUU UC UUACGUAGUCGGU CAGAG AU UGUCAAU GUACCAUAGUCUCGAUU        UAGGA UUGG       CA    GGUUGUG        UUAGGU  U GACUA                                                                       G CAAAG   U  A             U     -  U       U                 GUCGAUUC     G    ---GGUU  UCUC       -------U      AG -     AUAACGUAGUGACAGUCCAGUGCUUAGGUUGCUACCGGUAUCUUAACCCGUUUUGGUACCGUACGUCGUUC
Stem-loop sequence	CAAUAGCAAUGCAUCAGUUACGUUUCCUACAUAGUUACAUGGUAUCAGAGCUGAAAUCCUAAACCAAUGAAUGUUUAUCCAGCACCAAUCCCCUGCUGCUAGGAGCUGUAGCUCUCGGGGCAGUACCUAAUCCGCUGCUGAUCUGUUUCUAGUCAUGAAAAGCACUGUGAUCUGUAAGUGCUUGCUGCAUGCCAUGGUUUUGCCCAAUUCUAUGGCCAUCGUUGGAUUCGUGACCUGACAGUGAUGCAAUAAUCAGUGAUGGAUUUGUGUUGGCUCUACUUGGGGUUGAGGAUCUUAGCUGUUAGCUCUGAUACCAUGUUAACUGUUUAGAGACUUGGCUGAUGCAUUACUUUUGGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103785.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   *|||*||*|||||||||||||||| targets:13   CACAAUUCACAUGGUAUCAGAGCU   36 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033145I11, full insert sequence	NA	coding protein	psRNATarget
AK062634.1	ncRNA:24   UU--GUCAAUUGUACCAUAGUCUCGA   1   ||--=||||||*|||||||||||||* targets:8   AAGUUAGUUAAGAUGGUAUCAGAGCA   33 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-105-C12, full insert sequence	NA	coding protein	psRNATarget
XM_015767862.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   |||--||||=|||||||||||||* targets:181   AAC--UUAAUAUGGUAUCAGAGCC   202 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group leucine-rich repeat receptor-like protein kinase PXL2 (LOC107277122), mRNA	leucine-rich repeat receptor-like protein kinase PXL2(LOC107277122)	coding protein	psRNATarget
LQ236277.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   |||*-|*||||||||||||||||| targets:10   AACC-UCAACAUGGUAUCAGAGCU   32 Target Full Sequence	1.0	Sequence 2272 from Patent EP2985353	NA	coding protein	psRNATarget
JB164608.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   |||*-|*||||||||||||||||| targets:10   AACC-UCAACAUGGUAUCAGAGCU   32 Target Full Sequence	1.0	Sequence 2272 from Patent EP2559767	NA	coding protein	psRNATarget
HI404147.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   |||*-|*||||||||||||||||| targets:10   AACC-UCAACAUGGUAUCAGAGCU   32 Target Full Sequence	1.0	Sequence 2272 from Patent EP2074227	NA	coding protein	psRNATarget
AK106806.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   *||=*||*|||||||||||||||* targets:53   CACGCUUCACAUGGUAUCAGAGCC   76 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-116-C05, full insert sequence	NA	coding protein	psRNATarget
AK065463.1	ncRNA:24   UUGUCAAUUGUACCAUAGUCUCGA   1   ==***||=|||||||||||||||* targets:1   GGAUUUUGACAUGGUAUCAGAGCA   24 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013004M04, full insert sequence	NA	coding protein	psRNATarget
AK068488.1	ncRNA:24   UUGUCA-AUUGUACCAUAGUCUCGA   1   |*||*|-|||*|||||||||||||| targets:6   AUCACUGUAAGAUGGUAUCAGAGCU   30 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013157D04, full insert sequence	NA	coding protein	psRNATarget
XM_015771765.1	ncRNA:24   UUGUCA-AUUGUACCAUAGUCUCGA   1   |*||*|-|||*|||||||||||||| targets:33   AUCACUGUAAGAUGGUAUCAGAGCU   57 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329640 (LOC4329640), mRNA	uncharacterized LOC4329640(LOC4329640)	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).
2	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).