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BaseInfo

ncRNA ID	osa-miR2105
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:4602439-4602521 [+]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	54 - UUGUGAUGUGAAUGAUUCAU - 73
Stem-loop(if miRNA)	-  UG    U    UG     -     A      GA UU U  UU  GAUC GUGA  UAUUU CAUUA GAAUUU  G  G A  ||  |||| ||||  ||||| ||||| ||||||  |  | U  GG  UUAG UACU  GUAAG GUAGU UUUAAG  U  U U A  GU    U    UA     U     G      AG UU U
Stem-loop sequence	UUUGGAUCUGUGAUGUAUUUCAUUAAGAAUUUGAGUUGUAUUUUUUUGAGAAUUUGUGAUGUGAAUGAUUCAUUGAUUUGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288863.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   |**||||||||||||||||| targets:1077   ACAAAUCAUUCACAUCACAA   1096 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090077I20, full insert sequence	NA	coding protein	psRNATarget
XM_015759111.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   |||||*|||||||*|||||| targets:735   AUGAACCAUUCACCUCACAA   754 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable non-specific lipid-transfer protein AKCS9 (LOC4348109), mRNA	probable non-specific lipid-transfer protein AKCS9(LOC4348109)	coding protein	psRNATarget
CT833963.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:846   CAGAAUGAUUCACAUCACAA   865 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA231E02, full insert sequence	NA	coding protein	psRNATarget
XM_015764232.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:872   CAGAAUGAUUCACAUCACAA   891 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor HBP-1a (LOC4351839), transcript variant X4, mRNA	transcription factor HBP-1a(LOC4351839)	coding protein	psRNATarget
U04295.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:828   CAGAAUGAUUCACAUCACAA   847 Target Full Sequence	2.0	Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015764231.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:915   CAGAAUGAUUCACAUCACAA   934 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor HBP-1a (LOC4351839), transcript variant X1, mRNA	transcription factor HBP-1a(LOC4351839)	coding protein	psRNATarget
AK068766.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:663   CAGAAUGAUUCACAUCACAA   682 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013164D05, full insert sequence	NA	coding protein	psRNATarget
AK121360.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:847   CAGAAUGAUUCACAUCACAA   866 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023123F07, full insert sequence	NA	coding protein	psRNATarget
AK065767.1	ncRNA:20   UACUUAGUAAGUGUAGUGUU   1   **||||*||||||||||||| targets:806   CAGAAUGAUUCACAUCACAA   825 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013039C04, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).