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BaseInfo

ncRNA ID	osa-miR5160
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:2039472-2039851 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	12 - CGAGAUCGAUGGUAUAUUUCUG - 33
Stem-loop(if miRNA)	----CU                          A       A   A   --U ACGUCGUGGGCGGUAUCGUGCAGGGAAAGCCGGUCUCGCUGAUUGAAAUAGCGAUACCGGACUGCCACCGAUUCAAUUAGUGAUUAAUUAUCAUGAUUAGCGAUUAAUUAAUUAAUUAUUAAUCACUAAUCAGGAUAAUU       UUUUGCAGAAAUAUACCGUCGAUCUC CAUAACC UUG GCA   G                                                                                                                                            A       |||||||||||||||||||||||||| ||||||| ||| |||   |       AAAACGUCUUUAUAUGGUAGCUAGAG GUGUUGG AAC CGU   C                                                                                                                                            G UUUAAC                          C       C   G   UUU CCGCUCUGGCGCGUCAGAGCGCCUUGCCUUCUCGCCAGAGCGACUAACUUUGUCGCUGUGACAGAGUGACUACGUUACUAGAGGUGAAAAAUUAAUCACUAAUUAAUGGAUUAAUUGAUAAUUGAUUAUUAUAAAUCACU
Stem-loop sequence	CUUUUUGCAGAAAUAUACCGUCGAUCUCACAUAACCAUUGAGCAUGACGUCGUGGGCGGUAUCGUGCAGGGAAAGCCGGUCUCGCUGAUUGAAAUAGCGAUACCGGACUGCCACCGAUUCAAUUAGUGAUUAAUUAUCAUGAUUAGCGAUUAAUUAAUUAAUUAUUAAUCACUAAUCAGGAUAAUUAGUCACUAAAUAUUAUUAGUUAAUAGUUAAUUAGGUAAUUAAUCACUAAUUAAAAAGUGGAGAUCAUUGCAUCAGUGAGACAGUGUCGCUGUUUCAAUCAGCGAGACCGCUCUUCCGUUCCGCGAGACUGCGCGGUCUCGCCCUUUUGCGCAACGGUUGUGCGAGAUCGAUGGUAUAUUUCUGCAAAACAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243632.1	ncRNA:22   GUCUUUAUAUGGUAGCUAGAGC   1   =||||||||||||||||||||| targets:1893   UAGAAAUAUACCAUCGAUCUCG   1914 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100087C20, full insert sequence	NA	coding protein	psRNATarget
CT836247.1	ncRNA:22   GUCUUUAUAUGGUAGCUAGAGC   1   =|*||||||||||||||||||| targets:216   UACAAAUAUACCAUCGAUCUCG   237 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104I18, full insert sequence	NA	coding protein	psRNATarget
AK121294.1	ncRNA:22   GUCUUUAUAUGGUAGCUAGAGC   1   =|*|||||||||=||||||||| targets:448   UAUAAAUAUACCGUCGAUCUCG   469 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023110C02, full insert sequence	NA	coding protein	psRNATarget
AK289044.1	ncRNA:22   GUCUUUAUAUGGUAGCUAGAGC   1   |**|||||||||=||||||||| targets:3234   CCUAAAUAUACCGUCGAUCUCG   3255 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090092F18, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).