ncRNA ID | osa-miR6254 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:1970862-1971199 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UGCUCCGGAUAUUAUGGCAUG - 31 |
Stem-loop(if miRNA) |
AA        UG                A  UA             GUCAUUAU    UCAAGGUUUCGCAAAACCCAGCAUUCACUCAAAUCAUAAAAAAAACAACUUGUUGACACAUAUUCACUUCAUUUUUCAUGCCAUAAACCACUAUGUAUUGUUCAAAUGUUGG   UUGCAUAA  CUCCGGAUAUUAUGGC UG  GCAUAUAACCCUA        GGUA                                                                                                                U   ||||||||  |||||||||||||||| ||  |||||||||||||        ||||                                                                                                                U   AACGUAUU  GAGGCCUAUAAUACUG GC  CGUGUAUUGGGAU        AGAU                                                                                                                A UC        UG                A  UC             -----ACG    AUUGGAUCUUCAUAGUAUUUUAGGUAGGAUCAAGUUUAAAGUCGAUUAAAAUGGUAGGAACUGUAUUAUUACAAGUUUUGCAACUGACUAAUUUGACCAGUAGGACUAGUUC |
Stem-loop sequence | AAUUGCAUAAUGCUCCGGAUAUUAUGGCAUGUAGCAUAUAACCCUAGUCAUUAUGGUAUCAAGGUUUCGCAAAACCCAGCAUUCACUCAAAUCAUAAAAAAAACAACUUGUUGACACAUAUUCACUUCAUUUUUCAUGCCAUAAACCACUAUGUAUUGUUCAAAUGUUGGUUACUUGAUCAGGAUGACCAGUUUAAUCAGUCAACGUUUUGAACAUUAUUAUGUCAAGGAUGGUAAAAUUAGCUGAAAUUUGAACUAGGAUGGAUUUUAUGAUACUUCUAGGUUAUAGAGCAUAGGGUUAUGUGCCUCGAGUCAUAAUAUCCGGAGGUUUAUGCAACU |
1 | PMID:22585409
"Novel miRNAs in the control of arsenite levels in rice"; Liu Q; Funct Integr Genomics. 12:649-658(2012). |