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BaseInfo

ncRNA ID osa-miR6254
Species Oryza sativa
Class miRNA
Genome position Chr12:1970862-1971199 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGCUCCGGAUAUUAUGGCAUG - 31
Stem-loop(if miRNA) AA        UG                A  UA             GUCAUUAU    UCAAGGUUUCGCAAAACCCAGCAUUCACUCAAAUCAUAAAAAAAACAACUUGUUGACACAUAUUCACUUCAUUUUUCAUGCCAUAAACCACUAUGUAUUGUUCAAAUGUUGG
  UUGCAUAA  CUCCGGAUAUUAUGGC UG  GCAUAUAACCCUA        GGUA                                                                                                                U
  ||||||||  |||||||||||||||| ||  |||||||||||||        ||||                                                                                                                U
  AACGUAUU  GAGGCCUAUAAUACUG GC  CGUGUAUUGGGAU        AGAU                                                                                                                A
UC        UG                A  UC             -----ACG    AUUGGAUCUUCAUAGUAUUUUAGGUAGGAUCAAGUUUAAAGUCGAUUAAAAUGGUAGGAACUGUAUUAUUACAAGUUUUGCAACUGACUAAUUUGACCAGUAGGACUAGUUC
Stem-loop sequence AAUUGCAUAAUGCUCCGGAUAUUAUGGCAUGUAGCAUAUAACCCUAGUCAUUAUGGUAUCAAGGUUUCGCAAAACCCAGCAUUCACUCAAAUCAUAAAAAAAACAACUUGUUGACACAUAUUCACUUCAUUUUUCAUGCCAUAAACCACUAUGUAUUGUUCAAAUGUUGGUUACUUGAUCAGGAUGACCAGUUUAAUCAGUCAACGUUUUGAACAUUAUUAUGUCAAGGAUGGUAAAAUUAGCUGAAAUUUGAACUAGGAUGGAUUUUAUGAUACUUCUAGGUUAUAGAGCAUAGGGUUAUGUGCCUCGAGUCAUAAUAUCCGGAGGUUUAUGCAACU

Reference

1 PMID:22585409
"Novel miRNAs in the control of arsenite levels in rice";
Liu Q;
Funct Integr Genomics. 12:649-658(2012).