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BaseInfo

ncRNA ID ath-miR472-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:4182132-4182299 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 12 - UUUUUCCUACUCCGCCCAUACC - 33
Stem-loop(if miRNA) UC          -     U  A      C       C  - -UU   --A   GA      AUGAAU    UG  ---AU    G   GA
  UGUAUGUAUG UAUGG CG AGUAGG AAAAUCU AC C   UCU   GCA  UCAACA      UUUG  GA     AGAU UUG  U
  |||||||||| ||||| || |||||| ||||||| || |   |||   |||  ||||||      ||||  ||     |||| |||
  ACAUACAUAC AUACC GC UCAUCC UUUUAGA UG G   AGA   CGU  AGUUGU      GAAC  UU     UUUG AAU  U
CC          C     C  C      U       A  A UUU   ACG   AG      ------    GU  GUGGU    G   GU
Stem-loop sequence UCUGUAUGUAUGUAUGGUCGAAGUAGGCAAAAUCUCACCUUUCUAGCAGAUCAACAAUGAAUUUUGUGGAAUAGAUGUUGGAUUUGUAAGGUUUUGGUGUUUGCAAGUGUUGAGAUGCGCAAGAUUUGAGUAAGAUUUUUCCUACUCCGCCCAUACCAUACAUACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK317513.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:632   GGUAUGGGGGGAGUAGGAAAAA   653

1.0 Arabidopsis thaliana AT5G43740 mRNA, partial cds, clone: RAFL25-47-O14 NA coding protein psRNATarget
BT000491.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:532   GGUAUGGGGGGAGUAGGAAAAA   553

1.0 Arabidopsis thaliana disease resistance protein (At5g43740/MQD19_7) mRNA, complete cds NA coding protein psRNATarget
NM_104026.2
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:605   GGUAUGGGGGGAGUAGGAAAAA   626

1.0 Arabidopsis thaliana disease resistance protein (CC-NBS-LRR class) family protein mRNA disease resistance protein (CC-NBS-LRR class) family protein(AT1G51480) coding protein psRNATarget
AY050380.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:605   GGUAUGGGGGGAGUAGGAAAAA   626

1.0 Arabidopsis thaliana AT5g43740/MQD19_7 mRNA, complete cds NA coding protein psRNATarget
NM_180795.3
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:605   GGUAUGGGGGGAGUAGGAAAAA   626

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43740) coding protein psRNATarget
NM_123740.5
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||||||||||||
targets:673   GGUAUGGGGGGAGUAGGAAAAA   694

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43740) coding protein psRNATarget
NM_001332030.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=|||||||||||||
targets:418   GGCAUGGGUGGAGUAGGAAAAA   439

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family partial mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G12290) coding protein psRNATarget
NM_001332029.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=|||||||||||||
targets:632   GGCAUGGGUGGAGUAGGAAAAA   653

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G12290) coding protein psRNATarget
NM_101101.5
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=|||||||||||||
targets:763   GGCAUGGGUGGAGUAGGAAAAA   784

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G12290) coding protein psRNATarget
NM_001332028.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=|||||||||||||
targets:1116   GGCAUGGGUGGAGUAGGAAAAA   1137

1.0 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G12290) coding protein psRNATarget
NM_001332022.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||=||||||||*||||
targets:630   GGUAUGGGUGGAGUAGGCAAAA   651

2.5 Arabidopsis thaliana RPS5-like 1 (RFL1), partial mRNA RPS5-like 1(RFL1) coding protein psRNATarget
NM_125696.4
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||=||||||||*||||
targets:660   GGUAUGGGUGGAGUAGGUAAAA   681

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G63020) coding protein psRNATarget
NM_101093.2
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||=||||||||*||||
targets:571   GGUAUGGGUGGAGUAGGCAAAA   592

2.5 Arabidopsis thaliana RPS5-like 1 (RFL1), mRNA RPS5-like 1(RFL1) coding protein psRNATarget
NM_001332021.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||=||||||||*||||
targets:668   GGUAUGGGUGGAGUAGGCAAAA   689

2.5 Arabidopsis thaliana RPS5-like 1 (RFL1), mRNA RPS5-like 1(RFL1) coding protein psRNATarget
BT010583.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:547   GGUAUGGGGGGAGUAGGCAAAA   568

2.5 Arabidopsis thaliana At1g12220 mRNA, complete cds NA coding protein psRNATarget
NM_117146.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:538   GGUAUGGGGGGAGUAGGCAAAA   559

2.5 Arabidopsis thaliana LRR and NB-ARC domains-containing disease resistance protein partial mRNA LRR and NB-ARC domains-containing disease resistance protein(AT4G10780) coding protein psRNATarget
AK230460.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:624   GGUAUGGGGGGAAUAGGAAAAA   645

2.5 Arabidopsis thaliana mRNA for disease resistance protein, complete cds, clone: RAFL26-02-J21 NA coding protein psRNATarget
NM_001332190.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:543   GGUAUGGGGGGAGUAGGUAAAA   564

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G15890) coding protein psRNATarget
NM_001332024.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:497   GGUAUGGGGGGAGUAGGCAAAA   518

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family (RPS5), mRNA Disease resistance protein (CC-NBS-LRR class) family(RPS5) coding protein psRNATarget
AK221293.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:623   GGUAUGGGGGGAGUAGGCAAAA   644

2.5 Arabidopsis thaliana mRNA for NBS/LRR disease resistance protein, complete cds, clone: RAFL24-25-G21 NA coding protein psRNATarget
NM_001340685.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:538   GGUAUGGGGGGAGUAGGCAAAA   559

2.5 Arabidopsis thaliana LRR and NB-ARC domains-containing disease resistance protein partial mRNA LRR and NB-ARC domains-containing disease resistance protein(AT4G10780) coding protein psRNATarget
NM_101457.3
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:638   GGUAUGGGGGGAGUAGGUAAAA   659

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT1G15890) coding protein psRNATarget
NM_001344501.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:623   GGUAUGGGGGGAAUAGGAAAAA   644

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43730) coding protein psRNATarget
NM_101094.3
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:770   GGUAUGGGGGGAGUAGGCAAAA   791

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family (RPS5), mRNA Disease resistance protein (CC-NBS-LRR class) family(RPS5) coding protein psRNATarget
NM_001198041.2
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*||||||||*||||
targets:926   GGUAUGGGGGGAGUAGGCAAAA   947

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family (RPS5), mRNA Disease resistance protein (CC-NBS-LRR class) family(RPS5) coding protein psRNATarget
NM_001344504.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:535   GGUAUGGGGGGAAUAGGAAAAA   556

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family partial mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43730) coding protein psRNATarget
NM_001344503.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:535   GGUAUGGGGGGAAUAGGAAAAA   556

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family partial mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43730) coding protein psRNATarget
NM_001344502.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:623   GGUAUGGGGGGAAUAGGAAAAA   644

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43730) coding protein psRNATarget
NM_123739.3
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||||||||*|||*|||||||||
targets:571   GGUAUGGGGGGAAUAGGAAAAA   592

2.5 Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA Disease resistance protein (CC-NBS-LRR class) family(AT5G43730) coding protein psRNATarget
NM_001332027.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=||||||||*||||
targets:531   GGCAUGGGUGGAGUAGGCAAAA   552

2.5 Arabidopsis thaliana LRR and NB-ARC domains-containing disease resistance protein (SUMM2), partial mRNA LRR and NB-ARC domains-containing disease resistance protein(SUMM2) coding protein psRNATarget
NM_101100.2
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||=||||||||*||||
targets:648   GGCAUGGGUGGAGUAGGCAAAA   669

2.5 Arabidopsis thaliana LRR and NB-ARC domains-containing disease resistance protein (SUMM2), partial mRNA LRR and NB-ARC domains-containing disease resistance protein(SUMM2) coding protein psRNATarget
DQ446871.1
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||*||||||||*||||
targets:511   GGCAUGGGAGGAGUAGGUAAAA   532

2.5 Arabidopsis thaliana clone pENTR221-At4g27190 disease resistance protein (At4g27190) mRNA, complete cds NA coding protein psRNATarget
NM_118853.2
ncRNA:22   CCAUACCCGCCUCAUCCUUUUU   1
  ||*|||||*||||||||*||||
targets:620   GGCAUGGGAGGAGUAGGUAAAA   641

2.5 Arabidopsis thaliana NB-ARC domain-containing disease resistance protein partial mRNA NB-ARC domain-containing disease resistance protein(AT4G27190) coding protein psRNATarget

Reference

1 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
4 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).
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