Search result

BaseInfo

ncRNA ID osa-miR1846c-5p
Species Oryza sativa
Class miRNA
Genome position Chr12:270780-270865 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 20 - AGUGAGGAGGCCGGGGCCGCU - 40
Stem-loop(if miRNA) -AUGA  C         C        G         C     A
     GC GCCGGAUCU CCAGUGAG AGGCCGGGG CGCUG A
     || ||||||||| |||||||| ||||||||| |||||
     CG CGGCCUAGG GGUCGCUC UCUGGCCCC GUGGC U
AGAAA  -         C        G         A     C
Stem-loop sequence AUGAGCCGCCGGAUCUCCCAGUGAGGAGGCCGGGGCCGCUGAAUCCGGUGACCCCGGUCUGCUCGCUGGCGGAUCCGGCGCAAAGA

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).