Search result

BaseInfo

ncRNA ID	osa-miR531c
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:26930675-26930755 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	18 - CUCGCCGGGGCUGCGUGCCGCCAU - 41
Stem-loop(if miRNA)	C     CU      C     C        -  C GGCGCCG CGAGC  UGCUCG CGGGG UGCGUGCC GC A ||||||| |||||  |||||| ||||| |||||||| || CCGUGGC GCUCG  GCGAGC GCCCC ACGCGCGG CG U        A     UU      U     U        U  A
Stem-loop sequence	GGCGCCGCCGAGCCUUGCUCGCCGGGGCUGCGUGCCGCCAUAGCUGGCGCGCAUCCCCGUCGAGCGUUGCUCGACGGUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072288.1	ncRNA:24   UACCGCCGUGCGUCGGGGCCGCUC   1   =*||*|||=|||=||||||||||| targets:1171   GCGGAGGCGCGCGGCCCCGGCGAG   1194 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012O05, full insert sequence	NA	coding protein	psRNATarget
XM_015756552.1	ncRNA:24   UACCGCCGUGCGUCGGGGCCGCUC   1   =*||*|||=|||=||||||||||| targets:1469   GCGGAGGCGCGCGGCCCCGGCGAG   1492 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NUCLEAR FUSION DEFECTIVE 4 (LOC4347702), mRNA	protein NUCLEAR FUSION DEFECTIVE 4(LOC4347702)	coding protein	psRNATarget
AK099869.1	ncRNA:24   UACCGCCGUGCGUCGGGGCCGCUC   1   =*||*|||=|||=||||||||||| targets:1167   GCGGAGGCGCGCGGCCCCGGCGAG   1190 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013111E22, full insert sequence	NA	coding protein	psRNATarget
AK105374.1	ncRNA:24   UACCGCCGUGCGUCGGGGCCGCUC   1   =*||*|||=|||=||||||||||| targets:1160   GCGGAGGCGCGCGGCCCCGGCGAG   1183 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-120-D05, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:16126864 "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"; Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X; Plant Physiol. 139:296-305(2005).