| ncRNA ID | osa-miR5490 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:25091558-25091664 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UUGGAUUUUUAUUUAGGACGG - 31 |
| Stem-loop(if miRNA) |
G --A - CC U AG - --G A CUACUCC UGUCCUAAA GAAA UCA UC AAGG UGUACCUG AUG C ||||||| ||||||||| |||| ||| || |||| |||||||| ||| A GAUGAGG GCAGGAUUU UUUU GGU AG UUCC ACAUGGAC UAU U G GAG A UA U AA U AUA G |
| Stem-loop sequence | GCUACUCCAUGUCCUAAAGAAACCUCAUUCAGAAGGUGUACCUGGAUGACAUGUAUAUACAGGUACAUCCUUAAGAUUGGAUUUUUAUUUAGGACGGAGGGAGUAGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK287584.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015771325.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA | protein synthesis inhibitor I(LOC4324068) | coding protein | psRNATarget | |||||||||
| CT837290.1 |
|
3.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130C04, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |