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BaseInfo

ncRNA ID osa-miR5800
Species Oryza sativa
Class miRNA
Genome position Chr11:24921149-24921241 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - CCCGGCUAUCGGAACGGCUGC - 22
Stem-loop(if miRNA)      GAUA  -A     UA    UGAGAG   UCA      -C    U
AGCAG    UC  AUAGC  GGAU      GCA   GGAGAG  ACCU C
|||||    ||  |||||  ||||      |||   ||||||  |||| A
UCGUC    AG  UAUCG  CCUA      CGU   CCUUUC  UGGG A
     GGCA  GC     GC    ------   CUA      AA    C
Stem-loop sequence AGCAGGAUAUCAAUAGCUAGGAUUGAGAGGCAUCAGGAGAGCACCUUCAACGGGUAACUUUCCAUCUGCAUCCCGGCUAUCGGAACGGCUGCU

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).