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BaseInfo

ncRNA ID ath-miR172m
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - AGAAUCCUGAUGAUGCUGCAG - NA
Stem-loop(if miRNA) A     - UG  -GA  CU      UUU U     C     UC  C     CC  CCA   ----AA        U
 GAAUC C  AU   UG  GCAGCA   G CAACA UUGGU  GU GAGGC  GA   UCA      CCGGUGGU C
 ||||| |  ||   ||  ||||||   | ||||| |||||  || |||||  ||   |||      |||||||| U
 UUUGG G  UA   GC  CGUCGU   C GUUGU AACCA  CG CUCCG  CU   AGU      GGCCGCCG C
G     U GU  AAG  -C      --- -     -     -U  C     -C  AAG   GACAAA        A
Stem-loop sequence AGAAUCCUGAUGAUGCUGCAGCAUUUGUCAACACUUGGUUCGUCGAGGCCCGACCAUCAAACCGGUGGUUCUCAGCCGCCGGAAACAGUGAGAAUCCGCCUCCGCUACCAAUGUUGCUGCUGCCCGGAAAUUGGUGGUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY128328.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |||||||||||||||||||||
targets:520   CUGCAGCAUCAUCAGGAUUCU   540

0.0 Arabidopsis thaliana APETALA2 protein (At4g36920) mRNA, complete cds NA coding protein psRNATarget
U12546.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |||||||||||||||||||||
targets:1367   CUGCAGCAUCAUCAGGAUUCU   1387

0.0 Arabidopsis thaliana Columbia homeotic APETALA2 protein (APETALA2) mRNA, complete cds NA coding protein psRNATarget
NM_001204009.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |||||||||||||||||||||
targets:1293   CUGCAGCAUCAUCAGGAUUCU   1313

0.0 Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (AP2), mRNA Integrase-type DNA-binding superfamily protein(AP2) coding protein psRNATarget
NM_119856.3
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |||||||||||||||||||||
targets:1452   CUGCAGCAUCAUCAGGAUUCU   1472

0.0 Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (AP2), mRNA Integrase-type DNA-binding superfamily protein(AP2) coding protein psRNATarget
BT001916.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1280   AUGCAGCAUCAUCAGGAUUCU   1300

0.0 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds NA coding protein psRNATarget
AY074373.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1643   AUGCAGCAUCAUCAGGAUUCU   1663

0.0 Arabidopsis thaliana At5g60120 mRNA sequence NA coding protein psRNATarget
NM_001345393.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1723   AUGCAGCAUCAUCAGGAUUCU   1743

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
NM_125405.4
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1744   AUGCAGCAUCAUCAGGAUUCU   1764

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
NM_001203647.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1810   AUGCAGCAUCAUCAGGAUUCU   1830

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
NM_001345392.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1944   AUGCAGCAUCAUCAGGAUUCU   1964

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
NM_001345391.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:2127   AUGCAGCAUCAUCAGGAUUCU   2147

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
NM_001345390.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  *||||||||||||||||||||
targets:1944   AUGCAGCAUCAUCAGGAUUCU   1964

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 2 (TOE2), mRNA target of early activation tagged (EAT) 2(TOE2) coding protein psRNATarget
AF003100.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1127   CAGCAGCAUCAUCAGGAUUCU   1147

0.0 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds NA coding protein psRNATarget
AF325074.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1265   CAGCAGCAUCAUCAGGAUUCU   1285

0.0 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds NA coding protein psRNATarget
AY091418.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1265   CAGCAGCAUCAUCAGGAUUCU   1285

0.0 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds NA coding protein psRNATarget
BX820052.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1544   CAGCAGCAUCAUCAGGAUUCU   1564

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS68ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX820568.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1596   CAGCAGCAUCAUCAGGAUUCU   1616

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZH11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY050815.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1555   CAGCAGCAUCAUCAGGAUUCU   1575

0.0 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds NA coding protein psRNATarget
NM_001336171.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1780   CAGCAGCAUCAUCAGGAUUCU   1800

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
NM_001336170.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1671   CAGCAGCAUCAUCAGGAUUCU   1691

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
NM_128415.5
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1638   CAGCAGCAUCAUCAGGAUUCU   1658

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
NM_001202696.2
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1683   CAGCAGCAUCAUCAGGAUUCU   1703

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
NM_001336169.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1790   CAGCAGCAUCAUCAGGAUUCU   1810

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
NM_001336168.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  |*|||||||||||||||||||
targets:1896   CAGCAGCAUCAUCAGGAUUCU   1916

0.0 Arabidopsis thaliana related to AP2.7 (RAP2.7), mRNA related to AP2.7(RAP2.7) coding protein psRNATarget
BT029206.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =*|||||||||||||||||||
targets:983   UGGCAGCAUCAUCAGGAUUCU   1003

0.0 Arabidopsis thaliana At5g67180 mRNA, complete cds NA coding protein psRNATarget
BX832834.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =*|||||||||||||||||||
targets:1041   UGGCAGCAUCAUCAGGAUUCU   1061

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY088238.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =*|||||||||||||||||||
targets:1069   UGGCAGCAUCAUCAGGAUUCU   1089

0.0 Arabidopsis thaliana clone 4623 mRNA, complete sequence NA coding protein psRNATarget
NM_126118.4
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =*|||||||||||||||||||
targets:1298   UGGCAGCAUCAUCAGGAUUCU   1318

0.0 Arabidopsis thaliana target of early activation tagged (EAT) 3 (TOE3), mRNA target of early activation tagged (EAT) 3(TOE3) coding protein psRNATarget
AK176145.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =*|||||||||||||||||||
targets:1298   UGGCAGCAUCAUCAGGAUUCU   1318

0.0 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17 NA coding protein psRNATarget
NM_115356.2
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =|||||||||||||||||||*
targets:965   UUGCAGCAUCAUCAGGAUUCC   985

1.0 Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (SMZ), partial mRNA Integrase-type DNA-binding superfamily protein(SMZ) coding protein psRNATarget
AY576275.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =|||||||||||||||||||*
targets:965   UUGCAGCAUCAUCAGGAUUCC   985

1.0 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds NA coding protein psRNATarget
AY093386.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:889   UUGUAGCAUCAUCAGGAUUCC   909

2.0 Arabidopsis thaliana putative AP2 domain transcription factor (At2g39250) mRNA, complete cds NA coding protein psRNATarget
AY576276.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:902   UUGUAGCAUCAUCAGGAUUCC   922

2.0 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds NA coding protein psRNATarget
AK316729.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:1017   UUGUAGCAUCAUCAGGAUUCC   1037

2.0 Arabidopsis thaliana AT2G39250 mRNA, partial sequence, clone: RAFL07-11-O18 NA coding protein psRNATarget
AY062578.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:1030   UUGUAGCAUCAUCAGGAUUCC   1050

2.0 Arabidopsis thaliana putative AP2 domain transcription factor (At2g39250; T16B24.11) mRNA, complete cds NA coding protein psRNATarget
NM_001336762.1
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:1176   UUGUAGCAUCAUCAGGAUUCC   1196

2.0 Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (SNZ), mRNA Integrase-type DNA-binding superfamily protein(SNZ) coding protein psRNATarget
NM_179982.3
ncRNA:21   GACGUCGUAGUAGUCCUAAGA   1
  =||=||||||||||||||||*
targets:1147   UUGUAGCAUCAUCAGGAUUCC   1167

2.0 Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (SNZ), mRNA Integrase-type DNA-binding superfamily protein(SNZ) coding protein psRNATarget
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