ncRNA ID | osa-miR5837.2 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:24702021-24702212 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 162 - GGUGAUGUGGAGCGUUCGGCA - 182 |
Stem-loop(if miRNA) |
--GAAUUG        -   UG       C   -AA  - UG  A   C     --  U    AGA  UUCUUGAUGCUUUCCAAGCCUAUAGCUGUACA         GAAGGGUG AUG  GAGCGUU GGC   UG U  GA UGA AUGCA  GC UCGA   CA                                G         |||||||| |||  ||||||| |||   || |  || ||| |||||  || ||||   ||         UUUUCCGC UAU  UUUGCGA UCG   AC A  CU ACU UGUGU  CG AGUU   UG                                A CUGUUCCA        G   GU       U   GUA  U GU  C   C     UA  U    ---  AAAGAUUCUUUUGACGUACUCUAGGGAGGUAG |
Stem-loop sequence | GAAUUGGAAGGGUGAUGUGGAGCGUUCGGCAAUGUUGGAAUGACAUGCAGCUUCGAAGACAUUCUUGAUGCUUUCCAAGCCUAUAGCUGUACAGAGAUGGAGGGAUCUCAUGCAGUUUUCUUAGAAAGUUUGAUGCAUUGUGUCUCACUCUGAUCAAUGGCUUAGCGUUUUGUAUGCGCCUUUUACCUUGUC |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |