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BaseInfo

ncRNA ID osa-miR5793
Species Oryza sativa
Class miRNA
Genome position Chr11:24288999-24289076 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 4 - CGAGGACGAGAUACAGUGCAG - 24
Stem-loop(if miRNA)    -C  --        UACA     -   UCGC    C  A
ACC  GA  GGACGAGA    GUGCA GCA    GGGA GG A
|||  ||  ||||||||    ||||| |||    |||| ||
UGG  CU  CCUGUUCU    CAUGU CGU    UCCU UC A
   UC  AC        CUUC     G   ---U    -  U
Stem-loop sequence ACCCGAGGACGAGAUACAGUGCAGCAUCGCGGGACGGAAAUCUUCCUUUGCGUGUACCUUCUCUUGUCCCAUCCUGGU

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).