| ncRNA ID | osa-miR5509 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:24258580-24258815 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 206 - UAGGCAUUUUCUCUUGGCAUG - 226 |
| Stem-loop(if miRNA) |
UUUCCAA A -G AUUUUCUCUUGGCAUGCUGUGCAGCUUAUUCCAGGAAACAUUAUAUUGAACUUUAGUAGAGGAAUUGCAUAUUAAAGUUUUUCUUGAAGUAAGUCAAGUAAAUA GCCU G C U |||| | | U UGGG U U U ------U U GU UCUUUAUUGUUAGUGUCCCGCUAUCCGGACUGGUAAAGCUUAGGUUUCCGUGCGUAAUCCGUGAUCUGCCAUAGGGACGAUAGGGUUUACAUCGGACAGUGGUU |
| Stem-loop sequence | UUUCCAAGCCUAGGCAUUUUCUCUUGGCAUGCUGUGCAGCUUAUUCCAGGAAACAUUAUAUUGAACUUUAGUAGAGGAAUUGCAUAUUAAAGUUUUUCUUGAAGUAAGUCAAGUAAAUAUUUUUGGUGACAGGCUACAUUUGGGAUAGCAGGGAUACCGUCUAGUGCCUAAUGCGUGCCUUUGGAUUCGAAAUGGUCAGGCCUAUCGCCCUGUGAUUGUUAUUUCUUUGUUGGGUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK106875.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:002-118-E02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK071339.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:J023090K18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015784220.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group putative TrmH family tRNA/rRNA methyltransferase (LOC4337763), mRNA | putative TrmH family tRNA/rRNA methyltransferase(LOC4337763) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |