| ncRNA ID | osa-miR5489 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:23057493-23057776 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - CAGGUGUUCUCGAUGGCUUCC - 31 |
| Stem-loop(if miRNA) |
C CCUU UU U - - UA UAAAACAUAACUUCGUCCACAAA C UG C AAG GUUUGCAGACUUGUAGUCAUAGACUCUGGUGUGCAAACUACAGAGAAUACAUGAAGAAUAUUUCCUGAAUGUCCUUUC CAC GC GGA GCCAUUGA AACAC UGC GC UUCAU GU C CU A U ||| || ||| |||||||| ||||| ||| || ||||| || | || | GUG CG CCU CGGUAGCU UUGUG ACG CG UCCUU UA G UC U A - -AUC UU U C G UC ----------------------U - -- G --- AAUGAGAAACUAGAGAGAUCGAGUCUACGUCACCAAAGGACUUUGGAGGUUUCGGAUAACGAACUCUGUCUAUCCAUU |
| Stem-loop sequence | CCACCCUUGCUUGGAUGCCAUUGAAACACUGCUAGCUAAAACAUAACUUCGUCCACAAAUUCAUCGUUGCCCUAAGAGUUUGCAGACUUGUAGUCAUAGACUCUGGUGUGCAAACUACAGAGAAUACAUGAAGAAUAUUUCCUGAAUGUCCUUUCUAUUACCUAUCUGUCUCAAGCAAUAGGCUUUGGAGGUUUCAGGAAACCACUGCAUCUGAGCUAGAGAGAUCAAAGAGUAAUCUGGAUUUCCUUGCCUGCAGGUGUUCUCGAUGGCUUCCUUGCCUAGUG |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |