ncRNA ID | osa-miR2921 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:22213555-22213794 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 3 - AAGAACUUAAUAUAACUUUAAAGC - 26 |
Stem-loop(if miRNA) |
AUAAGAA   AAUAUAACUUUAAAGCAA    A  -- UAA -----------    AGGGCAGAUUUAGCAUAACAAUUAAGCAUAUGAUAUUAGAAUAGCUAAAUCAGGUAAGAUCGGCUGAAACUCCGAUACUAU        CUU                  UAAG UC  U   U           AUAA                                                                                 C        |||                  |||| ||  |   |           ||||        GAA                  AUCU AG  U   G           UACG                                                                                 U ------A   ---------------CAA    -  AA --- UCAAUAAAAUA    AAUUACAACGUAGCCAACUCAAGCUAGAUAAUUCAAGAUAGAUAUUAACACUAUAGAUCGAACAAAAUACUAGUAAAUAUC |
Stem-loop sequence | AUAAGAACUUAAUAUAACUUUAAAGCAAUAAGAUCUUAAUAUAAAGGGCAGAUUUAGCAUAACAAUUAAGCAUAUGAUAUUAGAAUAGCUAAAUCAGGUAAGAUCGGCUGAAACUCCGAUACUAUCUCUAUAAAUGAUCAUAAAACAAGCUAGAUAUCACAAUUAUAGAUAGAACUUAAUAGAUCGAACUCAACCGAUGCAACAUUAAGCAUAUAAAAUAACUGUAAGAUCUAAACAAGA |
1 | PMID:20131478
"Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses"; Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK; Mol Genet Genomics. 282:463-474(2009). |