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BaseInfo

ncRNA ID osa-miR2921
Species Oryza sativa
Class miRNA
Genome position Chr11:22213555-22213794 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 3 - AAGAACUUAAUAUAACUUUAAAGC - 26
Stem-loop(if miRNA) AUAAGAA   AAUAUAACUUUAAAGCAA    A  -- UAA -----------    AGGGCAGAUUUAGCAUAACAAUUAAGCAUAUGAUAUUAGAAUAGCUAAAUCAGGUAAGAUCGGCUGAAACUCCGAUACUAU
       CUU                  UAAG UC  U   U           AUAA                                                                                 C
       |||                  |||| ||  |   |           ||||
       GAA                  AUCU AG  U   G           UACG                                                                                 U
------A   ---------------CAA    -  AA --- UCAAUAAAAUA    AAUUACAACGUAGCCAACUCAAGCUAGAUAAUUCAAGAUAGAUAUUAACACUAUAGAUCGAACAAAAUACUAGUAAAUAUC
Stem-loop sequence AUAAGAACUUAAUAUAACUUUAAAGCAAUAAGAUCUUAAUAUAAAGGGCAGAUUUAGCAUAACAAUUAAGCAUAUGAUAUUAGAAUAGCUAAAUCAGGUAAGAUCGGCUGAAACUCCGAUACUAUCUCUAUAAAUGAUCAUAAAACAAGCUAGAUAUCACAAUUAUAGAUAGAACUUAAUAGAUCGAACUCAACCGAUGCAACAUUAAGCAUAUAAAAUAACUGUAAGAUCUAAACAAGA

Reference

1 PMID:20131478
"Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses";
Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK;
Mol Genet Genomics. 282:463-474(2009).