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BaseInfo

ncRNA ID osa-miR5823
Species Oryza sativa
Class miRNA
Genome position Chr11:21506677-21506783 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAGGAAUUGGGUCUAAUCUCUUCC - 34
Stem-loop(if miRNA) U     A  U  U    C           G    UG     GCUAUAAAU     U
 GUUUG AU GG GGGG UUAGGCUUAAU CCUU  GAUGG         GGAAU A
 ||||| || || |||| ||||||||||| ||||  |||||         |||||
 CAAAC UA CC UCUC AAUCUGGGUUA GGAA  CUAUC         CCUUG A
A     C  U  U    U           A    GU     -------AC     A
Stem-loop sequence UGUUUGAAUUGGUGGGGCUUAGGCUUAAUGCCUUUGGAUGGGCUAUAAAUGGAAUUAAAGUUCCCACUAUCUGAAGGAAUUGGGUCUAAUCUCUUCCUAUCCAAACA

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).