| ncRNA ID | osa-miR3979-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:19480150-19480263 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 85 - CUUCGGGGGAGGAGAGAAGC - 104 |
| Stem-loop(if miRNA) |
U -A U A ----UGG -U U GGUUU CUUGG UCUCUC CUCCCUUGAAGGCU UCUCA AGGU UGAUG A ||||| ||||| |||||| |||||||||||||| ||||| |||| ||||| C CCGAA GAACC AGAGAG GAGGGGGCUUCCGA AGAGU UCCG GUUAC A C GA - A CAAAGAA UU C |
| Stem-loop sequence | GGUUUUCUUGGAUCUCUCUCUCCCUUGAAGGCUAUCUCAUGGAGGUUUGAUGUACACCAUUGUUGCCUAAGAAACUGAGAAAGCCUUCGGGGGAGGAGAGAAGCCAAGCAAGCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK289065.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J090093P18, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21113019
"Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011). |
| 2 | PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011). |
| 3 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |