| ncRNA ID | osa-miR3979-5p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:19480150-19480263 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 13 - UCUCUCUCUCCCUUGAAGGC - 32 |
| Stem-loop(if miRNA) |
U -A U A ----UGG -U U GGUUU CUUGG UCUCUC CUCCCUUGAAGGCU UCUCA AGGU UGAUG A ||||| ||||| |||||| |||||||||||||| ||||| |||| ||||| C CCGAA GAACC AGAGAG GAGGGGGCUUCCGA AGAGU UCCG GUUAC A C GA - A CAAAGAA UU C |
| Stem-loop sequence | GGUUUUCUUGGAUCUCUCUCUCCCUUGAAGGCUAUCUCAUGGAGGUUUGAUGUACACCAUUGUUGCCUAAGAAACUGAGAAAGCCUUCGGGGGAGGAGAGAAGCCAAGCAAGCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015758259.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group replication factor C subunit 3 (LOC4349480), mRNA | replication factor C subunit 3(LOC4349480) | coding protein | psRNATarget | |||||||||
| AK111330.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:002-181-E02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK099505.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013028O17, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015766205.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324964 (LOC4324964), mRNA | uncharacterized LOC4324964(LOC4324964) | coding protein | psRNATarget | |||||||||
| AK108397.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-142-F11, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK119576.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-117-B05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015795352.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group mitochondrial carrier protein MTM1 (LOC4345459), transcript variant X2, mRNA | mitochondrial carrier protein MTM1(LOC4345459) | coding protein | psRNATarget | |||||||||
| AK073889.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J033075G13, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015795350.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group mitochondrial carrier protein MTM1 (LOC4345459), transcript variant X1, mRNA | mitochondrial carrier protein MTM1(LOC4345459) | coding protein | psRNATarget | |||||||||
| XM_015765587.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein argonaute 4A (LOC4324438), transcript variant X1, mRNA | protein argonaute 4A(LOC4324438) | coding protein | psRNATarget |
| 1 | PMID:21113019
"Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011). |
| 2 | PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011). |
| 3 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |