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BaseInfo

ncRNA ID	osa-miR535-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:16290530-16290623 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	69 - UGACAACGAGAGAGAGCACGC - 89
Stem-loop(if miRNA)	A            C      -----    U A   U GGCGGUGACAACG GAGAGAGCACGC GGUGCG     GCGG C CGG G ||||||||||||| |||||||||||| ||||||     |||| | ||| CCGUCACUGUUGC CUCUUUCGUGCG CCAUGC     CGCC G GCC A              C            U      GGCGG    C -   G
Stem-loop sequence	GGCGGUGACAACGAGAGAGAGCACGCCGGUGCGGCGGUCACGGUGAGCCGGCCCGCGGCGGCGUACCUGCGUGCUUUCUCCCGUUGUCACUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK119506.1	ncRNA:21   CGCACGAGAGAGAGCAACAGU   1   *=*||||||=||||||||||| targets:1734   UUAUGCUCUUUCUCGUUGUCA   1754 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-134-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015768851.1	ncRNA:21   CGCACGAGAGAGAGCAACAGU   1   *|||||||||||||||*|||* targets:38   UCGUGCUCUCUCUCGUCGUCU   58 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328523 (LOC4328523), mRNA	uncharacterized LOC4328523(LOC4328523)	coding protein	psRNATarget

Reference

1	PMID:16146523 "Cloning and characterization of micro-RNAs from moss"; Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC; Plant J. 43:837-848(2005).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).