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BaseInfo

ncRNA ID	osa-miR2867-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:16277650-16277750 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	13 - UGUGCCAUCCCACACAUCCCGA - 34
Stem-loop(if miRNA)	CAAU                       A   C A  A        G   CAA     UGACGGCGUGUGCCAUCCCACAC UCC G UC UGGCGUGU ACA   C     ||||||||||||||||||||||| ||| | || |||||||| |||     ACUGUUGUACACGGUAGGGUGUG AGG C AG ACCGUGCG UGU   U ----                       C   A C  C        -   AGG
Stem-loop sequence	CAAUUGACGGCGUGUGCCAUCCCACACAUCCCGAUCAUGGCGUGUGACACAACUGGAUGUGCGUGCCACGACCAGGACGUGUGGGAUGGCACAUGUUGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064585.1	ncRNA:22   AGCCCUACACACCCUACCGUGU   1   ****|=*||||||||||||||| targets:1629   CACCGGCGUGUGGGAUGGCACA   1650 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-112-F08, full insert sequence	NA	coding protein	psRNATarget
XM_015762302.1	ncRNA:22   AGCCCUACACACCCUACCGUGU   1   ****|=*||||||||||||||| targets:2621   CACUGGCGUGUGGGAUGGCACA   2642 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1-like (LOC107278690), mRNA	disease resistance protein RPM1-like(LOC107278690)	coding protein	psRNATarget
XM_015760124.1	ncRNA:22   AGCCCUACACACCCUACCGUGU   1   ****|=*||||||||||||||| targets:4650   CACUGGCGUGUGGGAUGGCACA   4671 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350851 (LOC4350851), mRNA	uncharacterized LOC4350851(LOC4350851)	coding protein	psRNATarget
XM_015761865.1	ncRNA:22   AGCCCUACACACCCUACCGUGU   1   ****|=*||||||||||||||| targets:4897   CACCGGCGUGUGGGAUGGCACA   4918 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350850 (LOC4350850), mRNA	uncharacterized LOC4350850(LOC4350850)	coding protein	psRNATarget
XM_015761824.1	ncRNA:22   AGCCCUACACACCCUACCGUGU   1   ****|=*||||||||||||||| targets:4925   CACCGGCGUGUGGGAUGGCACA   4946 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350779 (LOC4350779), mRNA	uncharacterized LOC4350779(LOC4350779)	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).
2	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).