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BaseInfo

ncRNA ID osa-miR2100-3p
Species Oryza sativa
Class miRNA
Genome position Chr11:16194999-16195151 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - AACCGCUGUUUAGGCGGAGUGG - 32
Stem-loop(if miRNA) U    -     U  AG     -     A  CAA     CAA -- AA   GUAGGGUGGGUGGGGAAGAUCGGAAGAAGCG
 UCCC UUCUC CA  UUGCC AAACA GC   GUUGC   A  C  GCC                               G
 |||| ||||| ||  ||||| ||||| ||   |||||   |  |  |||
 AGGG GAGGG GU  GGCGG UUUGU CG   CAAUG   C  U  UCU                               C
A    U     -  GA     A     -  --C     --U UU -C   AGCCAUUUUUCUUUUUUUUAUCGCUAGCUCA
Stem-loop sequence UUCCCUUCUCUCAAGUUGCCAAACAAGCCAAGUUGCCAAACAAGCCGUAGGGUGGGUGGGGAAGAUCGGAAGAAGCGGCACUCGAUCGCUAUUUUUUUUCUUUUUACCGAUCUCUUUCUGUAACCGCUGUUUAGGCGGAGUGGGGAGUGGGAA

Reference

1 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).