ncRNA ID | osa-miR1880 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:13959877-13960005 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 24 - UUCCAAGCGGGCCACUUAAGCAUU - 47 |
Stem-loop(if miRNA) |
-GU                     U    A               AU    C    -     UA    UCCGCUUGUGAAAAUCGAUUU UCCA GCGGGCCACUUAAGC  UCCG CUGU AAAAU  A    ||||||||||||||||||||| |||| |||||||||||||||  |||| |||| |||||  A    AGGCGGAUGCUUUUAGCUAAA AGGU CGCCUGGUGAAUUCG  AGGC GACG UUUUA  G AGU                     U    C               CU    C    C     UG |
Stem-loop sequence | GUUCCGCUUGUGAAAAUCGAUUUUUCCAAGCGGGCCACUUAAGCAUUCCGCCUGUAAAAUUAAAGGUAUUUUCGCAGCCGGAUCGCUUAAGUGGUCCGCCUGGAUAAAUCGAUUUUCGUAGGCGGAUGA |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |