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BaseInfo

ncRNA ID osa-miR1880
Species Oryza sativa
Class miRNA
Genome position Chr11:13959877-13960005 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 24 - UUCCAAGCGGGCCACUUAAGCAUU - 47
Stem-loop(if miRNA) -GU                     U    A               AU    C    -     UA
   UCCGCUUGUGAAAAUCGAUUU UCCA GCGGGCCACUUAAGC  UCCG CUGU AAAAU  A
   ||||||||||||||||||||| |||| |||||||||||||||  |||| |||| |||||  A
   AGGCGGAUGCUUUUAGCUAAA AGGU CGCCUGGUGAAUUCG  AGGC GACG UUUUA  G
AGU                     U    C               CU    C    C     UG
Stem-loop sequence GUUCCGCUUGUGAAAAUCGAUUUUUCCAAGCGGGCCACUUAAGCAUUCCGCCUGUAAAAUUAAAGGUAUUUUCGCAGCCGGAUCGCUUAAGUGGUCCGCCUGGAUAAAUCGAUUUUCGUAGGCGGAUGA

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).