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BaseInfo

ncRNA ID	osa-miR2104
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:13372008-13372112 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - GCGGCGAGGGGAUGCGAGCGUG - 32
Stem-loop(if miRNA)	A  -          G G  U  GA        -    CC   UG     G   G  CG GGCGCUCACG U GC UC  CCCUCGUC UCGG  GCG  CGGUA UGC G  || |||||||||| | || ||  |||||||| ||||  |||  ||||| ||| G  GC CCGUGAGUGC A CG AG  GGGAGCGG GGCC  UGU  GCCGU ACG A G  U          G G  U  --        C    -A   GU     -   G
Stem-loop sequence	ACGGGCGCUCACGGUGGCUUCGACCCUCGUCUCGGCCGCGUGCGGUAGUGCGGGAGGCAUGCCGUGUGUACCGGCGGCGAGGGGAUGCGAGCGUGAGUGCCUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK110942.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   |=|||*|||=|||||||||||| targets:95   CGCGCGCGCGUCCCCUCGCCGC   116 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence	NA	coding protein	psRNATarget
XM_015758443.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   |=|||*|||=|||||||||||| targets:89   CGCGCGCGCGUCCCCUCGCCGC   110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348617 (LOC4348617), mRNA	uncharacterized LOC4348617(LOC4348617)	coding protein	psRNATarget
CT828117.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   |||*|*|||||||||||||||| targets:278   CACCCGCGCAUCCCCUCGCCGC   299 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122A15, full insert sequence	NA	coding protein	psRNATarget
AK072363.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   =||||*|||*|||||||||||| targets:1478   UACGCCCGCUUCCCCUCGCCGC   1499 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023056P17, full insert sequence	NA	coding protein	psRNATarget
AK069191.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   |=|*|||||||||||*|||||| targets:204   CGCUCUCGCAUCCCCGCGCCGC   225 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003N22, full insert sequence	NA	coding protein	psRNATarget
XM_015795981.1	ncRNA:22   GUGCGAGCGUAGGGGAGCGGCG   1   |=|*|||||||||||*|||||| targets:325   CGCUCUCGCAUCCCCGCGCCGC   346 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347869 (LOC4347869), mRNA	uncharacterized LOC4347869(LOC4347869)	coding protein	psRNATarget

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).