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BaseInfo

ncRNA ID osa-miR440
Species Oryza sativa
Class miRNA
Genome position Chr11:9164805-9164924 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 23 - AGUGUCUCCUGAUGAUCGGGACAA - 46
Stem-loop(if miRNA)       A UG      C   G  C          C        U     CAA  -    CC
AUUGCU U  UUGGUG UGG CU GUCCUGAUCA UAGGAGAC CUGAU   GC UAGG  U
|||||| |  |||||| ||| || |||||||||| |||||||| |||||   || ||||
UAGCGA A  AGCCAC AUC GA CAGGGCUAGU GUCCUCUG GAUUA   UG AUUC  A
      G GU      A   G  A          A        U     ---  U    AA
Stem-loop sequence AUUGCUAUUGUUGGUGCUGGGCUCGUCCUGAUCACUAGGAGACUCUGAUCAAGCUAGGCCUAAACUUAUGUAUUAGUGUCUCCUGAUGAUCGGGACAAGGCUAACACCGAUGAGAGCGAU

Reference

1 PMID:15805478
"Cloning and characterization of microRNAs from rice";
Sunkar R, Girke T, Jain PK, Zhu JK;
Plant Cell. 17:1397-1411(2005).