Search result

BaseInfo

ncRNA ID	osa-miR5075
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:7878336-7878823 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUCUCCGUCGCCGCCGUCCGC - 31
Stem-loop(if miRNA)	GU    --   -    G   A   -      -  U     CCGUCG       -CA     -    CCGUGAGCGGGUACCGCACGGCGAGGCAGGGCGGGUUCGAGCGCGACGCCGAGUGGUUCGACCCGGCGGCGCGCGCGUGGCGCCGCCUCGACCGCGUCCGCGCCCCUCCCUCCGCCGCCCACGUCGUGGUCCGCGGCCGCGUCUGGUGCAUCGAGGGCGCCGCCGUGAUGGAGUGGCUCGGCUC   CGGA  GGA GCGG ACG GUG CGACGG GA GGCGA      CCGGCGA   GGUUC CUCG                                                                                                                                                                                        G   ||||  ||| |||| ||| ||| |||||| || |||||      |||||||   ||||| ||||                                                                                                                                                                                        C   GCCU  UCU CGCC UGC CGC GCUGCC CU CCGCU      GGCCGCU   GACCU CACC                                                                                                                                                                                        G --    AG   A    -   -   C      U  U     ----UA       UGA     C    CGCUUGGUGCCAGGUCAAGAACCAGAAAUGCAGCUUGUGGGUCUCCCGCACCGCCGGCCUGGGCGGCAGCCUCAGGAGCUACCGCGGCCACUGCUGCUGCGCGAGCGGCGGCGGCUGCGUCUGCCGCGCCCGCCACGGCCGGAACUCCGGGCCCCCCCUCCCCGGCUGGAGCGCGGUGGGCGGC
Stem-loop sequence	GUCGGAGGAGCGGGACGAGUGCGACGGGAUGGCGACCGUCGCCGGCGACAGGUUCCUCGCCGUGAGCGGGUACCGCACGGCGAGGCAGGGCGGGUUCGAGCGCGACGCCGAGUGGUUCGACCCGGCGGCGCGCGCGUGGCGCCGCCUCGACCGCGUCCGCGCCCCUCCCUCCGCCGCCCACGUCGUGGUCCGCGGCCGCGUCUGGUGCAUCGAGGGCGCCGCCGUGAUGGAGUGGCUCGGCUCGCGCGGCGGGUGGCGCGAGGUCGGCCCCUCCCCCCCGGGCCUCAAGGCCGGCACCGCCCGCGCCGUCUGCGUCGGCGGCGGCGAGCGCGUCGUCGUCACCGGCGCCAUCGAGGACUCCGACGGCGGGUCCGGCCGCCACGCCCUCUGGGUGUUCGACGUAAAGACCAAGAACUGGACCGUGGUUCGCCCACCUCCAGAGUUCGCCGGAUUCGCCUUCUCCGUCGCCGCCGUCCGCAUCUGAUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761610.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   ||||=||||||||||||||=| targets:154   GCGGGCGGCGGCGACGGAGGA   174 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calmodulin-interacting protein 111 (LOC4350096), mRNA	calmodulin-interacting protein 111(LOC4350096)	coding protein	psRNATarget
AK109713.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   ||||=||||||||||||||=| targets:162   GCGGGCGGCGGCGACGGAGGA   182 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015777370.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:1428   GCGGUACGGCGGCGACGGAGAG   1449 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UDP-N-acetylglucosamine transferase subunit ALG14 homolog (LOC4333143), transcript variant X4, mRNA	UDP-N-acetylglucosamine transferase subunit ALG14 homolog(LOC4333143)	coding protein	psRNATarget
XM_015777367.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:834   GCGGUACGGCGGCGACGGAGAG   855 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UDP-N-acetylglucosamine transferase subunit ALG14 homolog (LOC4333143), transcript variant X1, mRNA	UDP-N-acetylglucosamine transferase subunit ALG14 homolog(LOC4333143)	coding protein	psRNATarget
XM_015777368.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:374   GCGGUACGGCGGCGACGGAGAG   395 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UDP-N-acetylglucosamine transferase subunit ALG14 homolog (LOC4333143), transcript variant X2, mRNA	UDP-N-acetylglucosamine transferase subunit ALG14 homolog(LOC4333143)	coding protein	psRNATarget
XM_015790046.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:117   GCGGCACGGCGGCGACGGAGAG   138 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X1, mRNA	uncharacterized LOC107278742(LOC107278742)	coding protein	psRNATarget
XM_015790047.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:117   GCGGCACGGCGGCGACGGAGAG   138 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X2, mRNA	uncharacterized LOC107278742(LOC107278742)	coding protein	psRNATarget
XM_015788010.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   ||||*||||||||||||||=| targets:1717   GCGGCCGGCGGCGACGGAGGA   1737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transmembrane 9 superfamily member 9 (LOC4341685), mRNA	transmembrane 9 superfamily member 9(LOC4341685)	coding protein	psRNATarget
XM_015777369.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:192   GCGGUACGGCGGCGACGGAGAG   213 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UDP-N-acetylglucosamine transferase subunit ALG14 homolog (LOC4333143), transcript variant X3, mRNA	UDP-N-acetylglucosamine transferase subunit ALG14 homolog(LOC4333143)	coding protein	psRNATarget
CT829783.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:105   GCGGUACGGCGGCGACGGAGAG   126 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G18, full insert sequence	NA	coding protein	psRNATarget
AK066545.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   ||||*||||||||||||||=| targets:1514   GCGGCCGGCGGCGACGGAGGA   1534 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013069A19, full insert sequence	NA	coding protein	psRNATarget
CT829784.1	ncRNA:21   CGCC-UGCCGCCGCUGCCUCUU   1   ||||-||||||||||||||||= targets:42   GCGGUACGGCGGCGACGGAGAG   63 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109E10, full insert sequence	NA	coding protein	psRNATarget
XM_015779142.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   *|||||||||||||*|||||| targets:1212   CCGGACGGCGGCGAAGGAGAA   1232 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At1g65710 (LOC4336470), mRNA	uncharacterized protein At1g65710(LOC4336470)	coding protein	psRNATarget
AK240918.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   *|||||||||||||*|||||| targets:1183   CCGGACGGCGGCGAAGGAGAA   1203 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065037M09, full insert sequence	NA	coding protein	psRNATarget
XM_015784294.1	ncRNA:21   CGC-CUGCCGCCGCUGCCUCUU   1   *||-|=|||||||||||||||| targets:1400   ACGAGGCGGCGGCGACGGAGAA   1421 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group MAP/microtubule affinity-regulating kinase 3 (LOC4339754), mRNA	MAP/microtubule affinity-regulating kinase 3(LOC4339754)	coding protein	psRNATarget
AK107091.1	ncRNA:21   CGC-CUGCCGCCGCUGCCUCUU   1   *||-|=|||||||||||||||| targets:1280   ACGAGGCGGCGGCGACGGAGAA   1301 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-121-H01, full insert sequence	NA	coding protein	psRNATarget
AK110923.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   ||*|||||||||||||||||* targets:1096   GCAGACGGCGGCGACGGAGAC   1116 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-173-D04, full insert sequence	NA	coding protein	psRNATarget
AK107839.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   *|||=|||||||||||||||= targets:295   UCGGGCGGCGGCGACGGAGAG   315 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-133-H08, full insert sequence	NA	coding protein	psRNATarget
XM_015755910.1	ncRNA:21   CGCCUGCCGCCGCUGCCUCUU   1   *|||=|||||||||||||||= targets:289   UCGGGCGGCGGCGACGGAGAG   309 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347198 (LOC4347198), mRNA	uncharacterized LOC4347198(LOC4347198)	coding protein	psRNATarget

Reference

1	PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011).