| ncRNA ID | osa-miR2118r |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:7810223-7810397 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 39 - UUCCCAAUGCCUCCCAUGCCUA - 60 |
| Stem-loop(if miRNA) |
UG --- A AAAA GG A -A -- GAACAU CU UUC A G AGUC GGGAAG GGAAG GAG UCUAAGAGC GUGGGCAUGGGA CAU GGAGGAA GUA UUUC CCUCUA A | |||| |||||| ||||| ||| ||||||||| |||||||||||| ||| ||||||| ||| |||| |||||| C UCGG UCCUUC CCUUC CUC GGAUUCUUG CAUCCGUACCCU GUA CCUUUUU CGU AGAG GGAGAU U GU UUG C ---- AU A CC AC ACGAAU UU -UU U |
| Stem-loop sequence | GUGAGUCGGGAAGAGGAAGAAAAGAGGGUCUAAGAGCAGUGGGCAUGGGAACAUGGAGGAAGAACAUGUACUUUUCUUCCCUCUAAAUUUAGAGGUUGAGAUUUGCUAAGCAUUUUUCCCAAUGCCUCCCAUGCCUACAGUUCUUAGGUACUCCUUCCCCUUCCUGUUGGCUUGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB013451.1 |
|
2.5 | Oryza sativa Japonica Group PibH8 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AK065693.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013043I01, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015795400.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4346183), mRNA | putative disease resistance RPP13-like protein 3(LOC4346183) | coding protein | psRNATarget |
| 1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |